MANET: tracing evolution of protein architecture in metabolic networks. - Hee Shin Kim; Jay E. Mittenthal; Gustavo Caetano-Anollés (BMC Bioinform., 2006)

A phylogenomic reconstruction of the protein world based on a genomic census of protein fold architecture. - Minglei Wang; Simina Maria Boca; Rakhee Kalelkar; Jay E. Mittenthal; Gustavo Caetano-Anollés (Complex., 2006)

Widespread Recruitment of Ancient Domain Structures in Modern Enzymes during Metabolic Evolution. - Hee Shin Kim; Jay E. Mittenthal; Gustavo Caetano-Anollés (J. Integr. Bioinform., 2013)

The organization of domains in proteins obeys Menzerath-Altmann's law of language. - Khuram Shahzad; Jay E. Mittenthal; Gustavo Caetano-Anollés (BMC Syst. Biol., 2015)