Designing and selecting components for nucleic acid computers. - Michael P. Robertson; Jay R. Hesselberth; J. Colin Cox; Andrew D. Ellington (DNA Based Computers, 1999)

Aptamer Database. - Jennifer F. Lee; Jay R. Hesselberth; Lauren Ancel Meyers; Andrew D. Ellington (Nucleic Acids Res., 2004)

A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data. - Xiaoyu Chen; Michael M. Hoffman; Jeff A. Bilmes; Jay R. Hesselberth; William Stafford Noble (Bioinform., 2010)

valr: Reproducible genome interval analysis in R. - Kent A. Riemondy; Ryan M. Sheridan; Austin Gillen; Yinni Yu; Christopher G. Bennett; Jay R. Hesselberth (F1000Research, 2017)