A promoter-level mammalian expression atlas. - Fantom Consortium; RIKEN PMII; RIKEN CLST (DGT); Alistair R. R. Forrest; Hideya Kawaji; Michael Rehli; J. Kenneth Baillie; Michiel J. L. de Hoon; Vanja Haberle; Timo Lassmann; Ivan V. Kulakovskiy; Marina Lizio; et al. (Nat., 2014)

SCPortalen: human and mouse single-cell centric database. - Imad Abugessaisa; Shuhei Noguchi; Michael Böttcher; Akira Hasegawa; Tsukasa Kouno; Sachi Kato; Yuhki Tada; Hiroki Ura; Kuniya Abe; Jay W. Shin; Charles Plessy; Piero Carninci; et al. (Nucleic Acids Res., 2018)

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs. - Imad Abugessaisa; Jordan A. Ramilowski; Marina Lizio; Jesicca Severin; Akira Hasegawa; Jayson Harshbarger; Atsushi Kondo; Shuhei Noguchi; Chi Wai Yip; Jasmine Li Ching Ooi; Michihira Tagami; Fumi Hori; et al. (Nucleic Acids Res., 2021)

SCAFE: a software suite for analysis of transcribed cis-regulatory elements in single cells. - Jonathan Moody; Tsukasa Kouno; Jen-Chien Chang; Yoshinari Ando; Piero Carninci; Jay W. Shin; Chung-Chau Hon (Bioinform., 2022)