A search algorithm for skeletonization of thick patterns. - Ivaturi S. N. Murthy; Jayaram K. Udupa (Comput. Graph. Image Process., 1974)

Some new concepts for encoding line patterns. - Jayaram K. Udupa; Ivaturi S. N. Murthy (Pattern Recognit., 1975)

New Concepts for Three-Dimensional Shape Analysis. - Jayaram K. Udupa; Ivaturi S. N. Murthy (IEEE Trans. Computers, 1977)

Machine Visualization of Three-Dimensional Objects via Skeletal Transformations. - Jayaram K. Udupa; Ivaturi S. N. Murthy (IEEE Trans. Syst. Man Cybern., 1977)

Interactive segmentation and boundary surface formation for 3-D digital images. - Jayaram K. Udupa (Comput. Graph. Image Process., 1982)

Boundary Detection in Multidimensions. - Jayaram K. Udupa; Sargur N. Srihari; Gabor T. Herman (IEEE Trans. Pattern Anal. Mach. Intell., 1982)

Model Driven Visualization of Coronary Arteries. - Gabor T. Herman; Leon Axel; Ruzena Bajcsy; Harold L. Kundel; R. LeVeen; Jayaram K. Udupa; G. Wolf (IJCAI, 1983)

Interactive Surgical Planning. - Linda J. Brewster; Sushma S. Trivedi; Heang K. Tuy; Jayaram K. Udupa (IEEE Computer Graphics and Applications, 1984)

Surface Shading in the Cuberille Environment. - Lih-Shyang Chen; Gabor T. Herman; R. Anthony Reynolds; Jayaram K. Udupa (IEEE Computer Graphics and Applications, 1985)

Large Software Problems for Small Computers: An Example from Medical Imaging. - Gideon Frieder; Gabor T. Herman; Craig Meyer; Jayaram K. Udupa (IEEE Softw., 1985)

Fast surface tracking in three-dimensional binary images. - Dan Gordon 001; Jayaram K. Udupa (Comput. Vis. Graph. Image Process., 1989)

Registration of 3D objects and surfaces. - Klaus D. Tönnies; Jayaram K. Udupa; Gabor T. Herman; Isaac L. I. Wornom III; Steven R. Buchman (IEEE Computer Graphics and Applications, 1990)

Boundary and object labelling in three-dimensional images. - Jayaram K. Udupa; Venkatramana G. Ajjanagadde (Comput. Vis. Graph. Image Process., 1990)

Fast visualization, manipulation, and analysis of binary volumetric objects. - Jayaram K. Udupa; Dewey Odhner (IEEE Computer Graphics and Applications, 1991)

Combining shape-based and gray-level interpolations. - Roberto A. Lutufo; Gabor T. Herman; Jayaram K. Udupa (VBC, 1992)

Multidimensional image and structure data representation: a generalization of the ACR-NEMA standards (Proceedings Only). - Jayaram K. Udupa; Hsiu-Mei Hung; Dewey Odhner; Roberto J. Gonçalves; Supun Samarasekera (VBC, 1992)

Joint kinematics via three-dimensional MR imaging. - Jayaram K. Udupa; Bruce Elliot Hirsch; Supun Samarasekera; Roberto J. Gonçalves (VBC, 1992)

Boundary detection via dynamic programming. - Jayaram K. Udupa; Supun Samarasekera; William A. Barrett (VBC, 1992)

A justification of a fast surface tracking algorithm. - T. Yung Kong; Jayaram K. Udupa (CVGIP Graph. Model. Image Process., 1992)

Multidimensional data format specification: A generalization of the American College of Radiology-National Electric Manufacturers Association standards. - Jayaram K. Udupa; Hsiu-Mei Hung; Dewey Odhner; Roberto J. Gonçalves (J. Digit. Imaging, 1992)

Shell rendering. - Jayaram K. Udupa; Dewey Odhner (IEEE Computer Graphics and Applications, 1993)

Imaging transforms for visualizing surfaces and volumes. - Jayaram K. Udupa; Roberto J. Gonçalves (J. Digit. Imaging, 1993)

Kinematics of the tarsal joints via 3D MR imaging. - Bruce Elliot Hirsch; Jayaram K. Udupa; Supun Samarasekera (VBC, 1994)

Three-dimensional imaging in biomedical computing: principles, algorithms, and systems. - Jayaram K. Udupa (VBC, 1994)

Fuzzy objects and their boundaries. - Jayaram K. Udupa; Supun Samarasekera; Kootala P. Venugopal; George J. Grevera (VBC, 1994)

Multidimensional Digital Boundaries. - Jayaram K. Udupa (CVGIP Graph. Model. Image Process., 1994)

User-steered image boundary segmentation. - Alexandre Xavier Falcão; Jayaram K. Udupa; Supun Samarasekera; Bruce Elliot Hirsch (Image Processing, 1996)

Deformation of n-dimensional digital Jordan surfaces. - George J. Grevera; Jayaram K. Udupa (Image Processing, 1996)

Detection and quantification of MS lesions using fuzzy topological principles. - Jayaram K. Udupa; Luogang Wei; Supun Samarasekera; Yukio Miki; Mark A. van Buchem; Robert I. Grossman (Image Processing, 1996)

Fuzzy Connectedness and Object Definition: Theory, Algorithms, and Applications in Image Segmentation. - Jayaram K. Udupa; Supun Samarasekera (CVGIP Graph. Model. Image Process., 1996)

Shape-based interpolation of multidimensional grey-level images. - George J. Grevera; Jayaram K. Udupa (IEEE Trans. Medical Imaging, 1996)

Objective comparison of interpolation methods. - George J. Grevera; Jayaram K. Udupa (Image Processing, 1997)

Pentium PC-based craniofacial 3D imaging and analysis system. - Jayaram K. Udupa; Jie Tian; David C. Hemmy (Image Processing, 1997)

System for the comprehensive analysis of multiple sclerosis lesion load based on MR imagery. - Jayaram K. Udupa; Luogang Wei; Yukio Miki; Robert I. Grossman (Image Processing, 1997)

Multiple Sclerosis Lesion Quantification Using Fuzzy-Connectedness Principles. - Jayaram K. Udupa; Luogang Wei; Supun Samarasekera; Yukio Miki; Mark A. van Buchem; Robert I. Grossman (IEEE Trans. Medical Imaging, 1997)

User-Steered Image Segmentation Paradigms: Live Wire and Live Lane. - Alexandre X. Falcão; Jayaram K. Udupa; Supun Samarasekera; Shoba Sharma; Bruce Elliot Hirsch; Roberto de Alencar Lotufo (Graph. Model. Image Process., 1998)

Analysis of in vivo 3-D internal kinematics of the joints of the foot [MRI analysis]. - Jayaram K. Udupa; Bruce Elliot Hirsch; Howard J. Hillstrom; Gary R. Bauer; J. Bruce Kneeland (IEEE Trans. Biomed. Eng., 1998)

An Objective Comparison of Three-Dimensional Image Interpolation Methods. - George J. Grevera; Jayaram K. Udupa (IEEE Trans. Medical Imaging, 1998)

A study of 3D imaging approaches in medicine. - Jayaram K. Udupa (Discrete Mathematical Problems with Medical Applications, 1999)

New Variants of a Method of MRI Scale Normalization. - László G. Nyúl; Jayaram K. Udupa (IPMI, 1999)

Ultrafast user-steered image segmentation paradigm: live-wire-on-the-fly. - Alexandre Xavier Falcão; Jayaram K. Udupa; Flávio Keidi Miyazawa (Image Processing, 1999)

Scale-based fuzzy connectivity: a novel image segmentation methodology and its validation. - Punam K. Saha; Jayaram K. Udupa (Image Processing, 1999)

Near-automatic quantification of breast tissue glandularity via digitized mammograms. - Punam K. Saha; Jayaram K. Udupa; Emily F. Conant; Dev Prasad Chakraborty (Image Processing, 1999)

Fuzzy connected object definition in images with respect to co-objects. - Jayaram K. Udupa; Punam K. Saha; Roberto de Alencar Lotufo (Image Processing, 1999)

Fast Digital Perspective Shell Rendering. - Giulliano P. Carnielli; Alexandre X. Falcão; Jayaram K. Udupa (SIBGRAPI, 1999)

A Task-Specific Evaluation of Three-Dimensional Image Interpolation Techniques. - George J. Grevera; Jayaram K. Udupa; Yukio Miki (IEEE Trans. Medical Imaging, 1999)

A Characterization of the Geometric Architecture of the Peritalar Joint Complex via MRI: An Aid to Classification of Foot Type. - Eric Stindel; Jayaram K. Udupa; Bruce Elliot Hirsch; Dewey Odhner (IEEE Trans. Medical Imaging, 1999)

Go Digital, Go Fuzzy. - Jayaram K. Udupa (DGCI, 2000)

New optimum thresholding method using region homogeneity and class uncertainty. - Punam K. Saha; Jayaram K. Udupa (Image Processing, 2000)

Scale-based filtering of medical images. - Punam K. Saha; Jayaram K. Udupa (Image Processing, 2000)

Multiprotocol MR image segmentation in multiple sclerosis: experience with over 1000 studies. - Jayaram K. Udupa; László G. Nyúl; Yulin Ge; Robert I. Grossman (Image Processing, 2000)

Analysis of Volumetric Images. - A. Ardeshir Goshtasby; Milan Sonka; Jayaram K. Udupa (Comput. Vis. Image Underst., 2000)

Scale-Based Fuzzy Connected Image Segmentation: Theory, Algorithms, and Validation. - Punam K. Saha; Jayaram K. Udupa; Dewey Odhner (Comput. Vis. Image Underst., 2000)

Clutter-free volume rendering for magnetic resonance angiography using fuzzy connectedness. - Bowen L. Rice Jr.; Jayaram K. Udupa (Int. J. Imaging Syst. Technol., 2000)

A 3D generalization of user-steered live-wire segmentation. - Alexandre X. Falcão; Jayaram K. Udupa (Medical Image Anal., 2000)

An Ultra-Fast User-Steered Image Segementation Paradigm: Live-Wire-On-The-Fly. - Alexandre X. Falcão; Jayaram K. Udupa; Flávio Keidi Miyazawa (IEEE Trans. Medical Imaging, 2000)

New Variants of a Method of MRI Scale Standardization. - László G. Nyúl; Jayaram K. Udupa; Xuan Zhang (IEEE Trans. Medical Imaging, 2000)

An Order of Magnitude Faster Isosurface Rendering in Software on a PC than Using Dedicated, General Purpose Rendering Hardware. - George J. Grevera; Jayaram K. Udupa; Dewey Odhner (IEEE Trans. Vis. Comput. Graph., 2000)

Hybrid Segmentation of Anatomical Data. - Celina Imielinska; Dimitris N. Metaxas; Jayaram K. Udupa; Yinpeng Jin; Ting Chen 001 (MICCAI, 2001)

T-shell rendering. - George J. Grevera; Jayaram K. Udupa; Dewey Odhner (Image-Guided Procedures, 2001)

3DVIEWNIX-AVS: a software package for separate visualization of arteries and veins in CE-MRA images. - Tianhu Lei; Jayaram K. Udupa; Dewey Odhner; Punam K. Saha (Image-Guided Procedures, 2001)

Three-dimensional rendering in medicine: some common misconceptions. - Jayaram K. Udupa (Image-Guided Procedures, 2001)

New automatic mode of visualizing the colon via Cine CT. - Jayaram K. Udupa; Dewey Odhner; Harvey C. Eisenberg (Image-Guided Procedures, 2001)

Brain tumor segmentation in MRI by using the fuzzy connectedness method. - Jian-Guo Liu; Jayaram K. Udupa; David B. Hackney; Gul Moonis (Image Processing, 2001)

Task-specific comparison of 3D image registration methods. - László G. Nyúl; Jayaram K. Udupa; Punam K. Saha (Image Processing, 2001)

Automatic bone-free rendering of cerebral aneurysms via 3D CTA. - Punam K. Saha; John M. Abrahams; Jayaram K. Udupa (Image Processing, 2001)

Multiobject relative fuzzy connectedness and its implications in image segmentation. - Jayaram K. Udupa; Punam K. Saha (Image Processing, 2001)

Fuzzy Connected Object Delineation: Axiomatic Path Strength Definition and the Case of Multiple Seeds. - Punam K. Saha; Jayaram K. Udupa (Comput. Vis. Image Underst., 2001)

Relative Fuzzy Connectedness among Multiple Objects: Theory, Algorithms, and Applications in Image Segmentation. - Punam K. Saha; Jayaram K. Udupa (Comput. Vis. Image Underst., 2001)

Optimum Image Thresholding via Class Uncertainty and Region Homogeneity. - Punam K. Saha; Jayaram K. Udupa (IEEE Trans. Pattern Anal. Mach. Intell., 2001)

A sensor array processing approach to object region detection. - Tianhu Lei; Jayaram K. Udupa (IEEE Trans. Biomed. Eng., 2001)

An in vivo analysis of the motion of the peri-talar joint complex based on MR imaging. - Eric Stindel; Jayaram K. Udupa; Bruce Elliot Hirsch; Dewey Odhner (IEEE Trans. Biomed. Eng., 2001)

Artery-Vein Separation via MRA - An Image Processing Approach. - Tianhu Lei; Jayaram K. Udupa; Punam K. Saha; Dewey Odhner (IEEE Trans. Medical Imaging, 2001)

Breast Tissue Density Quantification via Digitized Mammograms. - Punam K. Saha; Jayaram K. Udupa; Emily F. Conant; Dev P. Chakraborty (IEEE Trans. Medical Imaging, 2001)

Comparative analysis of shell rendering and shear-warp rendering. - Alexandre Xavier Falcão; Leonardo M. Rocha; Jayaram K. Udupa (Image-Guided Procedures, 2002)

Area of and volume enclosed by digital and triangulated surfaces. - Ingela Nyström; Jayaram K. Udupa; George J. Grevera; Bruce Elliot Hirsch (Image-Guided Procedures, 2002)

Protocol-independent brain MRI segmentation method. - László G. Nyúl; Jayaram K. Udupa (Image Processing, 2002)

Iso-shaping rigid bodies for estimating their motion from image sequences. - Punam K. Saha; Jayaram K. Udupa; Bruce Elliot Hirsch (Image Processing, 2002)

Methodology for evaluating image-segmentation algorithms. - Jayaram K. Udupa; Vicki R. LeBlanc; Hilary Schmidt; Celina Imielinska; Punam K. Saha; George J. Grevera; Ying Zhuge; Leanne M. Currie; Pat Molholt; Yinpeng Jin (Image Processing, 2002)

Axiomatic path strength definition for fuzzy connectedness and the case of multiple seeds. - Jayaram K. Udupa; Punam K. Saha (Image Processing, 2002)

Scale-based method for correcting background intensity variation in acquired images. - Ying Zhuge; Jayaram K. Udupa; Jiamin Liu; Punam K. Saha; Tad Iwanaga (Image Processing, 2002)

Vectoral-scale-based fuzzy-connected image segmentation. - Ying Zhuge; Jayaram K. Udupa; Punam K. Saha (Image Processing, 2002)

Fuzzy-connected 3D image segmentation at interactive speeds. - László G. Nyúl; Alexandre X. Falcão; Jayaram K. Udupa (Graph. Model., 2002)

Relative Fuzzy Connectedness and Object Definition: Theory, Algorithms, and Applications in Image Segmentation. - Jayaram K. Udupa; Punam K. Saha; Roberto A. Lotufo (IEEE Trans. Pattern Anal. Mach. Intell., 2002)

Go digital, go fuzzy. - Jayaram K. Udupa; George J. Grevera (Pattern Recognit. Lett., 2002)

Scale-Based Diffusive Image Filtering Preserving Boundary Sharpness and Fine Structures. - Punam K. Saha; Jayaram K. Udupa (IEEE Trans. Medical Imaging, 2002)

Medical image reconstruction, processing, visualization and analysis: The MIPG perspective. - Jayaram K. Udupa; Gabor T. Herman (IEEE Trans. Medical Imaging, 2002)

Segmentation and Evaluation of Adipose Tissue from Whole Body MRI Scans. - Yinpeng Jin; Celina Imielinska; Andrew Laine; Jayaram K. Udupa; Wei Shen; Steven B. Heymsfield (MICCAI (1), 2003)

Combined approach of shell and shear-warp rendering for efficient volume visualization. - Alexandre Xavier Falcão; Leonardo M. Rocha; Jayaram K. Udupa (Image-Guided Procedures, 2003)

Alignment of multimodality, 2D and 3D breast images. - George J. Grevera; Jayaram K. Udupa (Image Processing, 2003)

Theoretical assessment of image analysis: statistical vs structural approaches. - Tianhu Lei; Jayaram K. Udupa (Image Processing, 2003)

Image analysis: reconstructing the true scene from noisy images. - Tianhu Lei; Jayaram K. Udupa (Image Processing, 2003)

Model-based 3D segmentation of the bones of the ankle and subtalar joints in MR images. - Jiamin Liu; Jayaram K. Udupa; Punam K. Saha; Dewey Odhner; Bruce Elliot Hirsch; Sorin Siegler (Image Processing, 2003)

The interplay between intensity standardization and field inhomogeneity correction in MR image processing. - Anant Madabhushi; Jayaram K. Udupa (Image Processing, 2003)

Interaction between noise suppression and inhomogeneity correction in MRI. - Albert Montillo; Jayaram K. Udupa; Leon Axel; Dimitris N. Metaxas (Image Processing, 2003)

Tensor scale-based fuzzy connectedness image segmentation. - Punam K. Saha; Jayaram K. Udupa (Image Processing, 2003)

Tensor scale-based image registration. - Punam K. Saha; Hui Zhang 005; Jayaram K. Udupa; James C. Gee (Image Processing, 2003)

Membership-based multiprotocol MR brain image segmentation. - Ying Zhuge; Jiamin Liu; Jayaram K. Udupa (Image Processing, 2003)

Scanning the issue - special issue on emerging medical imaging technology. - Christian Roux; Jayaram K. Udupa (Proc. IEEE, 2003)

Fuzzy connectedness and image segmentation. - Jayaram K. Udupa; Punam K. Saha (Proc. IEEE, 2003)

Performance evaluation of finite normal mixture model-based image segmentation techniques. - Tianhu Lei; Jayaram K. Udupa (IEEE Trans. Image Process., 2003)

Incorporating a Measure of Local Scale in Voxel-Based 3D Image Registration. - László G. Nyúl; Jayaram K. Udupa; Punam K. Saha (IEEE Trans. Medical Imaging, 2003)

GMIP: generalized maximum intensity projection. - George J. Grevera; Jayaram K. Udupa (Image-Guided Procedures, 2004)

Delineation operating characteristic (DOC) curve for assessing the accuracy behavior of image segmentation algorithms. - Jayaram K. Udupa; Ying Zhuge (Image Processing, 2004)

Multiple sclerosis lesion quantification in MR images by using vectorial scale-based relative fuzzy connectedness. - Ying Zhuge; Jayaram K. Udupa; László G. Nyúl (Image Processing, 2004)

Iso-shaping rigid bodies for estimating their motion from image sequences. - Punam K. Saha; Jayaram K. Udupa; Alexandre X. Falcão; Bruce Elliot Hirsch; Sorin Siegler (IEEE Trans. Medical Imaging, 2004)

T-shell rendering and manipulation. - George J. Grevera; Jayaram K. Udupa; Dewey Odhner (Image-Guided Procedures, 2005)

A new look at Markov random field (MRF) model-based MR image analysis. - Tianhu Lei; Jayaram K. Udupa (Image Processing, 2005)

Model-based 3D segmentation of the bones of joints in medical images. - Jiamin Liu; Jayaram K. Udupa; Punam Kumar Saha; Dewey Odhner; Bruce Elliot Hirsch; Sorin Siegler; Scott Simon; Beth A. Winkelstein (Image Processing, 2005)

New methods of MR image intensity standardization via generalized scale. - Anant Madabhushi; Jayaram K. Udupa (Image Processing, 2005)

Generalized ball-scale: theory, algorithms, and application to image inhomogeneity correction. - Anant Madabhushi; Jayaram K. Udupa; Andre D. A. Souza (Image Processing, 2005)

Automatic landmark selection for active shape models. - Andre D. A. Souza; Jayaram K. Udupa (Image Processing, 2005)

Generalized scale-based image filtering. - Andre D. A. Souza; Jayaram K. Udupa; Anant Madabhushi (Image Processing, 2005)

Interplay between intensity standardization and inhomogeneity correction in MR image processing. - Anant Madabhushi; Jayaram K. Udupa (IEEE Trans. Medical Imaging, 2005)

Volume rendering in the presence of partial volume effects. - Andre D. A. Souza; Jayaram K. Udupa; Punam K. Saha (IEEE Trans. Medical Imaging, 2005)

A new general method of 3D model generation for active shape image segmentation. - Seong-Jae Lim; Jayaram K. Udupa; Andre D. A. Souza; Yong-Yeon Jeong; Yo-Sung Ho; Drew A. Torigian (Image Processing, 2006)

Iterative live wire and live snake: new user-steered 3D image segmentation paradigms. - Andre D. A. Souza; Jayaram K. Udupa; George J. Grevera; Yi Sun; Dewey Odhner; Neeti Suri; Mitchell D. Schnall (Image Processing, 2006)

A framework for evaluating image segmentation algorithms. - Jayaram K. Udupa; Vicki R. LeBlanc; Ying Zhuge; Celina Imielinska; Hilary Schmidt; Leanne M. Currie; Bruce Elliot Hirsch; James Woodburn (Comput. Medical Imaging Graph., 2006)

Generalized scale: Theory, algorithms, and application to image inhomogeneity correction. - Anant Madabhushi; Jayaram K. Udupa; Andre D. A. Souza (Comput. Vis. Image Underst., 2006)

Vectorial scale-based fuzzy-connected image segmentation. - Ying Zhuge; Jayaram K. Udupa; Punam K. Saha (Comput. Vis. Image Underst., 2006)

CAVASS: a computer assisted visualization and analysis software system - visualization aspects. - George J. Grevera; Jayaram K. Udupa; Dewey Odhner; Ying Zhuge; Andre D. A. Souza; Tad Iwanaga; Shipra Mishra (Image-Guided Procedures, 2007)

CAVASS: a computer-assisted visualization and analysis software system - image processing aspects. - Jayaram K. Udupa; George J. Grevera; Dewey Odhner; Ying Zhuge; Andre D. A. Souza; Shipra Mishra; Tad Iwanaga (Image-Guided Procedures, 2007)

A general theory of image segmentation: level set segmentation in the fuzzy connectedness framework. - Krzysztof Chris Ciesielski; Jayaram K. Udupa (Image Processing, 2007)

Oriented active shape models for 3D segmentation in medical images. - Jiamin Liu; Jayaram K. Udupa (Image Processing, 2007)

Fuzzy shape-based interpolation. - Punam Kumar Saha; Ying Zhuge; Jayaram K. Udupa (Image Processing, 2007)

Local Scale for Boundary Shape Description: Application in Locating Landmarks Automatically. - Sylvia Rueda; Jayaram K. Udupa; Li Bai 001 (SIBGRAPI, 2007)

Iterative relative fuzzy connectedness for multiple objects with multiple seeds. - Krzysztof Ciesielski; Jayaram K. Udupa; Punam K. Saha; Ying Zhuge (Comput. Vis. Image Underst., 2007)

Clouds: A model for synergistic image segmentation. - Paulo A. V. Miranda; Alexandre X. Falcão; Jayaram K. Udupa (ISBI, 2008)

Landmark selection for shape model construction via equalization of variance. - Sylvia Rueda; Jayaram K. Udupa; Li Bai 001 (ISBI, 2008)

The architecture and performance of CAVASS. - George J. Grevera; Jayaram K. Udupa; Dewey Odhner; Ying Zhuge; Andre D. A. Souza (Image-Guided Procedures, 2008)

A new method of automatic landmark tagging for shape model construction via local curvature scale. - Sylvia Rueda; Jayaram K. Udupa; Li Bai 001 (Image-Guided Procedures, 2008)

Local curvature scale: a new concept of shape description. - Sylvia Rueda; Jayaram Koteshwar Udupa; Li Bai 001 (Image Processing, 2008)

Image filtering via generalized scale. - Andre D. A. Souza; Jayaram K. Udupa; Anant Madabhushi (Medical Image Anal., 2008)

Cloud Bank: A Multiple Clouds Model and its Use in MR Brain Image Segmentation. - Paulo A. V. Miranda; Alexandre X. Falcão; Jayaram K. Udupa (ISBI, 2009)

nD statistical shape model building via recursive boundary subdivision. - Sylvia Rueda; Jayaram K. Udupa (Image-Guided Procedures, 2009)

Curvature and shape variance based landmark tagging methods for building statistical object models. - Sylvia Rueda; Jayaram K. Udupa; Li Bai 001 (Image-Guided Procedures, 2009)

Cluster of workstation based nonrigid image registration using free-form deformation. - Xiaofen Zheng; Jayaram K. Udupa; Xinjian Chen 001 (Image-Guided Procedures, 2009)

GC-ASM: synergistic integration of active shape modeling and graph-cut methods. - Xinjian Chen 001; Jayaram K. Udupa; Drew A. Torigian; Abass Alavi (Image Processing, 2009)

Automatic anatomy recognition via multi-object-oriented active shape models. - Xinjian Chen 001; Jayaram K. Udupa; Xiaofen Zheng; Abass Alavi; Drew A. Torigian (Image Processing, 2009)

Affinity functions: recognizing essential parameters in fuzzy connectedness based image segmentation. - Krzysztof Chris Ciesielski; Jayaram K. Udupa (Image Processing, 2009)

Linear time algorithms for exact distance transform: elaboration on Maurer et al. algorithm. - Krzysztof Chris Ciesielski; Jayaram K. Udupa; Xinjian Chen 001; George J. Grevera (Image Processing, 2009)

A comparison of local and global scale approaches in characterizing shapes. - Sylvia Rueda; Jayaram K. Udupa; Li Bai 001 (Image Processing, 2009)

Image background inhomogeneity correction in MRI via intensity standardization. - Ying Zhuge; Jayaram K. Udupa; Jiamin Liu; Punam K. Saha (Comput. Medical Imaging Graph., 2009)

Intensity standardization simplifies brain MR image segmentation. - Ying Zhuge; Jayaram K. Udupa (Comput. Vis. Image Underst., 2009)

Oriented Active Shape Models. - Jiamin Liu; Jayaram K. Udupa (IEEE Trans. Medical Imaging, 2009)

Pathology detection on medical images based in oriented active appearance models. - Xinjian Chen 001; Jayaram K. Udupa; Abass Alavi; Drew A. Torigian (Computer-Aided Diagnosis, 2010)

The influence of intensity standardization on medical image registration. - Ulas Bagci; Jayaram K. Udupa; Li Bai 001 (Image-Guided Procedures, 2010)

3D automatic anatomy recognition based on iterative graph-cut-ASM. - Xinjian Chen 001; Jayaram K. Udupa; Ulas Bagci; Abass Alavi; Drew A. Torigian (Image-Guided Procedures, 2010)

Ball-scale based hierarchical multi-object recognition in 3D medical images. - Ulas Bagci; Jayaram K. Udupa; Xinjian Chen 001 (Image Processing, 2010)

Fuzzy affinity induced curve evolution. - Ying Zhuge; Jayaram K. Udupa; Robert W. Miller (Image Processing, 2010)

Affinity functions in fuzzy connectedness based image segmentation I: Equivalence of affinities. - Krzysztof Chris Ciesielski; Jayaram K. Udupa (Comput. Vis. Image Underst., 2010)

Affinity functions in fuzzy connectedness based image segmentation II: Defining and recognizing truly novel affinities. - Krzysztof Chris Ciesielski; Jayaram K. Udupa (Comput. Vis. Image Underst., 2010)

Synergistic arc-weight estimation for interactive image segmentation using graphs. - Paulo A. V. de Miranda; Alexandre X. Falcão; Jayaram K. Udupa (Comput. Vis. Image Underst., 2010)

The role of intensity standardization in medical image registration. - Ulas Bagci; Jayaram K. Udupa; Li Bai 001 (Pattern Recognit. Lett., 2010)

Shape modeling via local curvature scale. - Sylvia Rueda; Jayaram K. Udupa; Li Bai 001 (Pattern Recognit. Lett., 2010)

Intensity non-standardness affects computer recognition of anatomical structures. - Ulas Bagci; Jayaram K. Udupa; Xinjian Chen 001 (Image-Guided Procedures, 2011)

Fuzzy object modeling. - Jayaram K. Udupa; Dewey Odhner; Alexandre X. Falcão; Krzysztof Chris Ciesielski; Paulo A. V. Miranda; Pavithra Vaideeswaran; Shipra Mishra; George J. Grevera; Babak Saboury; Drew A. Torigian (Image-Guided Procedures, 2011)

Elastic image registration via rigid object motion induced deformation. - Xiaofen Zheng; Jayaram K. Udupa; Bruce Elliot Hirsch (Image-Guided Procedures, 2011)

Orientation estimation of anatomical structures in medical images for object recognition. - Ulas Bagci; Jayaram K. Udupa; Xinjian Chen 001 (Image Processing, 2011)

Comparison of fuzzy connectedness and graph cut segmentation algorithms. - Krzysztof Chris Ciesielski; Jayaram K. Udupa; Alexandre X. Falcão; Paulo A. V. Miranda (Image Processing, 2011)

Global-to-local, shape-based, real and virtual landmarks for shape modeling by recursive boundary subdivision. - Sylvia Rueda; Jayaram K. Udupa (Image Processing, 2011)

Efficient computation of enclosed volume and surface area from the same triangulated surface representation. - Ingela Nyström; George J. Grevera; Bruce Elliot Hirsch; Jayaram K. Udupa (Comput. Medical Imaging Graph., 2011)

A framework for comparing different image segmentation methods and its use in studying equivalences between level set and fuzzy connectedness frameworks. - Krzysztof Chris Ciesielski; Jayaram K. Udupa (Comput. Vis. Image Underst., 2011)

Linear Time Algorithms for Exact Distance Transform. - Krzysztof Chris Ciesielski; Xinjian Chen 001; Jayaram K. Udupa; George J. Grevera (J. Math. Imaging Vis., 2011)

Image segmentation by combining the strengths of Relative Fuzzy Connectedness and Graph Cut. - Krzysztof Chris Ciesielski; Paulo A. V. Miranda; Jayaram K. Udupa; Alexandre X. Falcão (ICIP, 2012)

Co-segmentation of Functional and Anatomical Images. - Ulas Bagci; Jayaram K. Udupa; Jianhua Yao 001; Daniel J. Mollura (MICCAI (3), 2012)

Automatic anatomy recognition via fuzzy object models. - Jayaram K. Udupa; Dewey Odhner; Alexandre X. Falcão; Krzysztof Chris Ciesielski; Paulo A. V. Miranda; Monica M. S. Matsumoto; George J. Grevera; Babak Saboury; Drew A. Torigian (Image-Guided Procedures, 2012)

GPU-based iterative relative fuzzy connectedness image segmentation. - Ying Zhuge; Jayaram K. Udupa; Krzysztof Chris Ciesielski; Alexandre X. Falcão; Paulo A. V. Miranda; Robert W. Miller (Image-Guided Procedures, 2012)

A unifying graph-cut image segmentation framework: algorithms it encompasses and equivalences among them. - Krzysztof Chris Ciesielski; Jayaram K. Udupa; Alexandre X. Falcão; Paulo A. V. Miranda (Image Processing, 2012)

Fuzzy object model based fuzzy connectedness image segmentation of newborn brain MR images. - Syoji Kobashi; Jayaram K. Udupa (SMC, 2012)

Brain tissue MR-image segmentation via optimum-path forest clustering. - Fabio A. M. Cappabianco; Alexandre X. Falcão; Clarissa L. Yasuda; Jayaram K. Udupa (Comput. Vis. Image Underst., 2012)

Fuzzy Connectedness Image Segmentation in Graph Cut Formulation: A Linear-Time Algorithm and a Comparative Analysis. - Krzysztof Chris Ciesielski; Jayaram K. Udupa; Alexandre X. Falcão; Paulo A. V. Miranda (J. Math. Imaging Vis., 2012)

Medical Image Segmentation by Combining Graph Cuts and Oriented Active Appearance Models. - Xinjian Chen 001; Jayaram K. Udupa; Ulas Bagci; Ying Zhuge; Jianhua Yao 001 (IEEE Trans. Image Process., 2012)

Hierarchical Scale-Based Multiobject Recognition of 3-D Anatomical Structures. - Ulas Bagci; Xinjian Chen 001; Jayaram K. Udupa (IEEE Trans. Medical Imaging, 2012)

Fuzzy connectedness image segmentation for newborn brain extraction in MR images. - Syoji Kobashi; Jayaram K. Udupa (EMBC, 2013)

Automatic segmentation of vocal tract MR images. - Zeynab Raeesy; Sylvia Rueda; Jayaram K. Udupa; John S. Coleman (ISBI, 2013)

Recognition of upper airway and surrounding structures at MRI in pediatric PCOS and OSAS. - Yubing Tong; Jayaram K. Udupa; Dewey Odhner; Sanghun Sin; Raanan Arens (Computer-Aided Diagnosis, 2013)

Optimal hierarchies for fuzzy object models. - Monica M. S. Matsumoto; Jayaram K. Udupa (Image-Guided Procedures, 2013)

Fuzzy model-based body-wide anatomy recognition in medical images. - Jayaram K. Udupa; Dewey Odhner; Yubing Tong; Monica M. S. Matsumoto; Krzysztof Chris Ciesielski; Pavithra Vaideeswaran; Victoria Ciesielski; Babak Saboury; Liming Zhao; Syedmehrdad Mohammadianrasanani; Drew A. Torigian (Image-Guided Procedures, 2013)

Fuzzy model based object delineation via energy minimization. - Krzysztof Chris Ciesielski; Jayaram K. Udupa; Dewey Odhner; Liming Zhao (Image Processing, 2013)

GC-ASM: Synergistic integration of graph-cut and active shape model strategies for medical image segmentation. - Xinjian Chen 001; Jayaram K. Udupa; Abass Alavi; Drew A. Torigian (Comput. Vis. Image Underst., 2013)

Joint segmentation of anatomical and functional images: Applications in quantification of lesions from PET, PET-CT, MRI-PET, and MRI-PET-CT images. - Ulas Bagci; Jayaram K. Udupa; Neil Mendhiratta; Brent Foster; Ziyue Xu 001; Jianhua Yao 001; Xinjian Chen 001; Daniel J. Mollura (Medical Image Anal., 2013)

Joint graph cut and relative fuzzy connectedness image segmentation algorithm. - Krzysztof Chris Ciesielski; Paulo A. V. Miranda; Alexandre X. Falcão; Jayaram K. Udupa (Medical Image Anal., 2013)

Improving Atlas-Based Medical Image Segmentation with a Relaxed Object Search. - Renzo Phellan; Alexandre X. Falcão; Jayaram K. Udupa (CompIMAGE, 2014)

CIDI-lung-seg: A single-click annotation tool for automatic delineation of lungs from CT scans. - Awais Mansoor; Ulas Bagci; Brent Foster; Ziyue Xu 001; Deborah Douglas; Jeffrey M. Solomon; Jayaram K. Udupa; Daniel J. Mollura (EMBC, 2014)

Automatic localization of IASLC-defined mediastinal lymph node stations on CT images using fuzzy models. - Monica M. S. Matsumoto; Niha G. Beig; Jayaram K. Udupa; Steven Archer; Drew A. Torigian (Computer-Aided Diagnosis, 2014)

Differential and Relaxed Image Foresting Transform for Graph-Cut Segmentation of Multiple 3D Objects. - Nikolas Moya; Alexandre X. Falcão; Krzysztof Ciesielski; Jayaram K. Udupa (MICCAI (1), 2014)

Automatic thoracic anatomy segmentation on CT images using hierarchical fuzzy models and registration. - Kaioqiong Sun; Jayaram K. Udupa; Dewey Odhner; Yubing Tong; Drew A. Torigian (Image-Guided Procedures, 2014)

Multiple fuzzy object modeling improves sensitivity in automatic anatomy recognition. - Letícia Rittner; Jayaram K. Udupa; Drew A. Torigian (Image Processing, 2014)

Standardized anatomic space for abdominal fat quantification. - Yubing Tong; Jayaram K. Udupa; Drew A. Torigian (Image Processing, 2014)

Body-wide hierarchical fuzzy modeling, recognition, and delineation of anatomy in medical images. - Jayaram K. Udupa; Dewey Odhner; Liming Zhao; Yubing Tong; Monica M. S. Matsumoto; Krzysztof Chris Ciesielski; Alexandre X. Falcão; Pavithra Vaideeswaran; Victoria Ciesielski; Babak Saboury; Syedmehrdad Mohammadianrasanani; Sanghun Sin; et al. (Medical Image Anal., 2014)

A Generic Approach to Pathological Lung Segmentation. - Awais Mansoor; Ulas Bagci; Ziyue Xu 001; Brent Foster; Kenneth N. Olivier; Jason M. Elinoff; Anthony F. Suffredini; Jayaram K. Udupa; Daniel J. Mollura (IEEE Trans. Medical Imaging, 2014)

MR image analytics to characterize upper airway architecture in children with OSAS. - Yubing Tong; Jayaram K. Udupa; Drew A. Torigian; Monica M. S. Matsumoto; Sanghun Sin; Raanan Arens (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2015)

Automatic anatomy recognition in post-tonsillectomy MR images of obese children with OSAS. - Yubing Tong; Jayaram K. Udupa; Dewey Odhner; Sanghun Sin; Raanan Arens (Computer-Aided Diagnosis, 2015)

Medical image segmentation using object atlas versus object cloud models. - Renzo Phellan; Alexandre X. Falcão; Jayaram K. Udupa (Image-Guided Procedures, 2015)

Interactive non-uniformity correction and intensity standardization of MR images. - Yubing Tong; Jayaram K. Udupa; Dewey Odhner; Shobhit Sharma; Drew A. Torigian (Image-Guided Procedures, 2015)

Body-wide anatomy recognition in PET/CT images. - Huiqian Wang; Jayaram K. Udupa; Dewey Odhner; Yubing Tong; Liming Zhao; Drew A. Torigian (Image-Guided Procedures, 2015)

Automatic anatomy recognition of sparse objects. - Liming Zhao; Jayaram K. Udupa; Dewey Odhner; Huiqian Wang; Yubing Tong; Drew A. Torigian (Image Processing, 2015)

A hybrid method for airway segmentation and automated measurement of bronchial wall thickness on CT. - Ziyue Xu 001; Ulas Bagci; Brent Foster; Awais Mansoor; Jayaram K. Udupa; Daniel J. Mollura (Medical Image Anal., 2015)

Correction to "A Generic Approach to Pathological Lung Segmentation". - Awais Mansoor; Ulas Bagci; Ziyue Xu 001; Brent Foster; Kenneth N. Olivier; Jason M. Elinoff; Anthony F. Suffredini; Jayaram K. Udupa; Daniel J. Mollura (IEEE Trans. Medical Imaging, 2015)

Definition and automatic anatomy recognition of lymph node zones in the pelvis on CT images. - Yu Liu; Jayaram K. Udupa; Dewey Odhner; Yubing Tong; Shuxu Guo; Rosemary Attor; Danica Reinicke; Drew A. Torigian (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Fat quantification and analysis of lung transplant patients on unenhanced chest CT images based on standardized anatomic space. - Yubing Tong; Jayaram K. Udupa; Drew A. Torigian; Caiyun Wu; Jason D. Christie; David J. Lederer (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Automatic anatomy recognition on CT images with pathology. - Lidong Huang; Jayaram K. Udupa; Yubing Tong; Dewey Odhner; Drew A. Torigian (Computer-Aided Diagnosis, 2016)

Lymph node detection in IASLC-defined zones on PET/CT images. - Yihua Song; Jayaram K. Udupa; Dewey Odhner; Yubing Tong; Drew A. Torigian (Computer-Aided Diagnosis, 2016)

A general approach to liver lesion segmentation in CT images. - Li Cao; Jayaram K. Udupa; Dewey Odhner; Lidong Huang; Yubing Tong; Drew A. Torigian (Image-Guided Procedures, 2016)

Optimal atlas construction through hierarchical image registration. - George J. Grevera; Jayaram K. Udupa; Dewey Odhner; Drew A. Torigian (Image-Guided Procedures, 2016)

Fat segmentation on chest CT images via fuzzy models. - Yubing Tong; Jayaram K. Udupa; Caiyun Wu; Gargi Pednekar; Janani Rajan Subramanian; David J. Lederer; Jason D. Christie; Drew A. Torigian (Image-Guided Procedures, 2016)

Quantitative normal thoracic anatomy at CT. - Monica M. S. Matsumoto; Jayaram K. Udupa; Yubing Tong; Babak Saboury; Drew A. Torigian (Comput. Medical Imaging Graph., 2016)

Soft Computing in Medical Image Processing. - Syoji Kobashi; László G. Nyúl; Jayaram K. Udupa (Comput. Math. Methods Medicine, 2016)

A critical analysis of the methods of evaluating MRI brain segmentation algorithms. - Fabio A. M. Cappabianco; Paulo A. V. de Miranda; Jayaram K. Udupa (ICIP, 2017)

Disease quantification on PET/CT images without object delineation. - Yubing Tong; Jayaram K. Udupa; Dewey Odhner; Caiyun Wu; Danielle Fitzpatrick; Nicole Winchell; Stephen J. Schuster; Drew A. Torigian (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2017)

Interactive iterative relative fuzzy connectedness lung segmentation on thoracic 4D dynamic MR images. - Yubing Tong; Jayaram K. Udupa; Dewey Odhner; Caiyun Wu; Yue Zhao; Joseph M. McDonough; Anthony Capraro; Drew A. Torigian; Robert M. Campbell Jr. (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2017)

Automatic thoracic body region localization. - Peirui Bai; Jayaram K. Udupa; Yubing Tong; Shipeng Xie; Drew A. Torigian (Computer-Aided Diagnosis, 2017)

Virtual landmarks. - Yubing Tong; Jayaram K. Udupa; Dewey Odhner; Peirui Bai; Drew A. Torigian (Image-Guided Procedures, 2017)

Retrospective 4D MR image construction from free-breathing slice Acquisitions: A novel graph-based approach. - Yubing Tong; Jayaram K. Udupa; Krzysztof Chris Ciesielski; Caiyun Wu; Joseph M. McDonough; David A. Mong; Robert M. Campbell Jr. (Medical Image Anal., 2017)

Hierarchical model-based object localization for auto-contouring in head and neck radiation therapy planning. - Yubing Tong; Jayaram K. Udupa; Xingyu Wu; Dewey Odhner; Gargi Pednekar; Charles B. Simone II; David McLaughlin; Chavanon Apinorasethkul; Geraldine Shammo; Paul James; Joseph Camaratta; Drew A. Torigian (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018)

Quantitative dynamic MRI (QdMRI) volumetric analysis of pediatric patients with thoracic insufficiency syndrome. - Yubing Tong; Jayaram K. Udupa; E. Paul Wileyto; Caiyun Wu; Joseph M. McDonough; Anthony Capraro; Oscar H. Mayer; Drew A. Torigian; Robert M. Campbell Jr. (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018)

Lung parenchymal analysis on dynamic MRI in thoracic insufficiency syndrome to assess changes following surgical intervention. - Basavaraj N. Jagadale; Jayaram K. Udupa; Yubing Tong; Caiyun Wu; Joseph M. McDonough; Drew A. Torigian; Robert M. Campbell Jr. (Computer-Aided Diagnosis, 2018)

Quantitative analysis of adipose tissue on chest CT to predict primary graft dysfunction in lung transplant recipients: a novel optimal biomarker approach. - Yubing Tong; Jayaram K. Udupa; Chuang Wang; Caiyun Wu; Gargi Pednekar; Michaela D. Restivo; David J. Lederer; Jason D. Christie; Drew A. Torigian (Computer-Aided Diagnosis, 2018)

Urinary bladder cancer T-staging from T2-weighted MR images using an optimal biomarker approach. - Chuang Wang; Jayaram K. Udupa; Yubing Tong; Jerry Chen; Sriram Venigalla; Dewey Odhner; Thomas J. Guzzo; John Christodouleas; Drew A. Torigian (Computer-Aided Diagnosis, 2018)

Image quality and segmentation. - Gargi V. Pednekar; Jayaram K. Udupa; David J. McLaughlin; Xingyu Wu; Yubing Tong; Charles B. Simone II; Joseph Camaratta; Drew A. Torigian (Image-Guided Procedures, 2018)

Architectural analysis on dynamic MRI to study thoracic insufficiency syndrome. - Jie Song 014; Jayaram K. Udupa; Yubing Tong; Liang Xiao 001; Caiyun Wu; Joseph M. McDonough; Anthony Capraro; Drew A. Torigian; Robert M. Campbell Jr. (Image-Guided Procedures, 2018)

Auto-contouring via automatic anatomy recognition of organs at risk in head and neck cancer on CT images. - Xingyu Wu; Jayaram K. Udupa; Yubing Tong; Dewey Odhner; Gargi V. Pednekar; Charles B. Simone II; David McLaughlin; Chavanon Apinorasethkul; John Lukens; Dimitris Mihailidis; Geraldine Shammo; Paul James; et al. (Image-Guided Procedures, 2018)

Thoracic lymph node station recognition on CT images based on automatic anatomy recognition with an optimal parent strategy. - Guoping Xu; Jayaram K. Udupa; Yubing Tong; Hanqiang Cao; Dewey Odhner; Drew A. Torigian; Xingyu Wu (Image Processing, 2018)

Automatic anatomy recognition using neural network learning of object relationships via virtual landmarks. - Fengxia Yan; Jayaram K. Udupa; Yubing Tong; Guoping Xu; Dewey Odhner; Drew A. Torigian (Image Processing, 2018)

A General and Balanced Region-Based Metric for Evaluating Medical Image Segmentation Algorithms. - Fábio A. M. Cappabianco; Pedro F. O. Ribeiro; Paulo A. V. de Miranda; Jayaram K. Udupa (ICIP, 2019)

Auto-labeling of respiratory time points in free-breathing thoracic dynamic MR image acquisitions for 4D image construction. - Chang-Jian Sun; Jayaram K. Udupa; Yubing Tong; Caiyun Wu; Shuxu Guo; Joseph M. McDonough; Drew A. Torigian; Robert M. Campbell Jr. (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019)

Super-mask-based object localization for auto-contouring in head and neck radiation therapy planning. - Yubing Tong; Jayaram K. Udupa; Drew A. Torigian (Image-Guided Procedures, 2019)

Obtaining the potential number of models/atlases needed for capturing anatomic variations in population images. - Ze Jin; Jayaram K. Udupa; Drew A. Torigian (Image Processing, 2019)

How many models/atlases are needed as priors for capturing anatomic population variations? - Ze Jin; Jayaram K. Udupa; Drew A. Torigian (Medical Image Anal., 2019)

Disease quantification on PET/CT images without explicit object delineation. - Yubing Tong; Jayaram K. Udupa; Dewey Odhner; Caiyun Wu; Stephen J. Schuster; Drew A. Torigian (Medical Image Anal., 2019)

AAR-RT - A system for auto-contouring organs at risk on CT images for radiation therapy planning: Principles, design, and large-scale evaluation on head-and-neck and thoracic cancer cases. - Xingyu Wu; Jayaram K. Udupa; Yubing Tong; Dewey Odhner; Gargi V. Pednekar; Charles B. Simone II; David McLaughlin; Chavanon Apinorasethkul; Ontida Apinorasethkul; John Lukens; Dimitris Mihailidis; Geraldine Shammo; et al. (Medical Image Anal., 2019)

Segmentation of 4D images via space-time neural networks. - Chang-Jian Sun; Jayaram K. Udupa; Yubing Tong; Sanghun Sin; Mark E. Wagshul; Drew A. Torigian; Raanan Arens (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2020)

Localization and segmentation of optimal slices for chest fat quantification in CT via deep learning. - Jizheng Yi; Jayaram K. Udupa; Yubing Tong; Michaela R. Anderson; David J. Lederer; Jason D. Christie; Drew A. Torigian (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2020)

A post-acquisition standardization method for positron emission tomography images. - Aliasghar Mortazi; Jayaram K. Udupa; Yubing Tong; Drew A. Torigian (Computer-Aided Diagnosis, 2020)

Obtaining the potential number of object models/atlases needed in medical image analysis. - Ze Jin; Jayaram K. Udupa; Drew A. Torigian (Image-Guided Procedures, 2020)

Automatic labeling of respiratory phases and detection of abnormal respiratory signals in free-breathing thoracic dynamic MR image acquisitions based on deep learning. - Chang-Jian Sun; Jayaram K. Udupa; Yubing Tong; Caiyun Wu; Joseph M. McDonough; Catherine Qiu; Carina Lott; Jason B. Anari; Drew A. Torigian; Patrick J. Cahill (Image-Guided Procedures, 2020)

Anatomy segmentation evaluation with sparse ground truth data. - Jieyu Li; Jayaram K. Udupa; Yubing Tong; Lisheng Wang; Drew A. Torigian (Image Processing, 2020)

LinSEM: Linearizing segmentation evaluation metrics for medical images. - Jieyu Li; Jayaram K. Udupa; Yubing Tong; Lisheng Wang; Drew A. Torigian (Medical Image Anal., 2020)

Automatic upper airway segmentation in static and dynamic MRI via deep convolutional neural networks. - Lipeng Xie; Jayaram K. Udupa; Yubing Tong; Drew A. Torigian; Zihan Huang; Rachel M. Kogan; Jennifer Ben Nathan; David Wootton; Kokren Choy; Sanghun Sin; Mark E. Wagshul; Raanan Arens (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2021)

Lung parenchymal characterization via thoracic dynamic MRI in normal children and pediatric patients with TIS. - Yubing Tong; Jayaram K. Udupa; Joseph M. McDonough; Carina Lott; Caiyun Wu; Chamith S. Rajapakse; Jason B. Anari; Drew A. Torigian; Patrick J. Cahill (Image-Guided Procedures, 2021)

Anatomy recognition in CT images of head and neck region via precision atlases. - Jieyu Li; Jayaram K. Udupa; Yubing Tong; Dewey Odhner; Drew A. Torigian (Image Processing, 2021)

DiSegNet: A deep dilated convolutional encoder-decoder architecture for lymph node segmentation on PET/CT images. - Guoping Xu; Hanqiang Cao; Jayaram K. Udupa; Yubing Tong; Drew A. Torigian (Comput. Medical Imaging Graph., 2021)

OFx: A method of 4D image construction from free-breathing non-gated MRI slice acquisitions of the thorax via optical flux. - You Hao; Jayaram K. Udupa; Yubing Tong; Caiyun Wu; Hua Li 009; Joseph M. McDonough; Carina Lott; Catherine Qiu; Nirupa Galagedera; Jason B. Anari; Drew A. Torigian; Patrick J. Cahill (Medical Image Anal., 2021)

Segmentation evaluation with sparse ground truth data: Simulating true segmentations as perfect/imperfect as those generated by humans. - Jieyu Li; Jayaram K. Udupa; Yubing Tong; Lisheng Wang; Drew A. Torigian (Medical Image Anal., 2021)

Upper airway motion analysis in obstructive sleep apnea syndrome (OSAS) via dynamic MRI. - You Hao; Jayaram K. Udupa; Yubing Tong; Drew A. Torigian; Zihan Huang; Rachel M. Kogan; Lipeng Xie; David Wootton; Kokren Choy; Sanghun Sin; Mark E. Wagshul; Raanan Arens (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2022)

Bone and bone marrow segmentation from hip 3T magnetic resonance imaging by using local salient anatomy structure to guide deep learning-based object localization and delineation. - Yubing Tong; Zihan Huang; Jayaram K. Udupa; Leihui Tong; Brandon C. Jones; Gregory Chang; Drew A. Torigian; Chamith S. Rajapakse (Image-Guided Procedures, 2022)

QdMRI: a system for a comprehensive analysis of thoracic dynamics via dynamic MRI. - Yubing Tong; Jayaram K. Udupa; You Hao; Lipeng Xie; Joseph M. McDonough; Caiyun Wu; Carina Lott; Abigail Clark; Jason B. Anari; Drew A. Torigian; Patrick J. Cahill (Image-Guided Procedures, 2022)

Anatomy-guided deep learning for object localization in medical images. - Chao Jin; Jayaram K. Udupa; Liming Zhao; Yubing Tong; Dewey Odhner; Gargi Pednekar; Sanghita Nag; Sharon Lewis; Nicholas Poole; Sutirth Mannikeri; Sudarshana Govindasamy; Aarushi Singh; et al. (Image Processing, 2022)

An anatomy-based iteratively searching convolutional neural network for organ localization in CT images. - Tiange Liu; Meng Tan; Yubing Tong; Drew A. Torigian; Jayaram K. Udupa (Image Processing, 2022)

Automatic lung segmentation in dynamic thoracic MRI using two-stage deep convolutional neural networks. - Lipeng Xie; Jayaram K. Udupa; Yubing Tong; Joseph M. McDonough; Caiyun Wu; Carina Lott; Jason B. Anari; Patrick J. Cahill; Drew A. Torigian (Image Processing, 2022)

Organ segmentation from computed tomography images using the 3D convolutional neural network: a systematic review. - Ademola Enitan Ilesanmi; Taiwo Ilesanmi; Oluwagbenga Paul Idowu; Drew A. Torigian; Jayaram K. Udupa (Int. J. Multim. Inf. Retr., 2022)

Object recognition in medical images via anatomy-guided deep learning. - Chao Jin; Jayaram K. Udupa; Liming Zhao; Yubing Tong; Dewey Odhner; Gargi Pednekar; Sanghita Nag; Sharon Lewis; Nicholas Poole; Sutirth Mannikeri; Sudarshana Govindasamy; Aarushi Singh; et al. (Medical Image Anal., 2022)

Gradient-Aligned convolution neural network. - You Hao; Ping Hu; Shirui Li; Jayaram K. Udupa; Yubing Tong; Hua Li 009 (Pattern Recognit., 2022)

A Minimally Interactive Method for Labeling Respiratory Phases in Free-Breathing Thoracic Dynamic MRI for Constructing 4D Images. - Chang-Jian Sun; Jayaram K. Udupa; Yubing Tong; Caiyun Wu; Shuxu Guo; Joseph M. McDonough; Drew A. Torigian; Patrick J. Cahill (IEEE Trans. Biomed. Eng., 2022)

Object Localization Using Non-Euclidean Metrics. - Ulas Bagci; Jayaram K. Udupa; Xinjian Chen 001; Drew A. Torigian; Alpay Medetalibeyoglu; Diwei Zhou; Li Bai 001 (IoTaIS, 2023)

A deep-learning-based geographic attention model for body composition tissue segmentation. - Jian Dai; Jayaram K. Udupa; Drew A. Torigian; Yubing Tong; Pengju Nie; Jing Zhang; Ran Li; Shiwei Han; Tian Liu 004 (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2023)

Estimating normal metabolic activity for disease quantification via PET/CT images. - Jieyu Li; Jayaram K. Udupa; Yubing Tong; Drew A. Torigian (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2023)

Auto-segmentation of thoraco-abdominal organs in free breathing pediatric dynamic MRI. - Yusuf Akhtar; Jayaram K. Udupa; Yubing Tong; Tiange Liu; Caiyun Wu; Dewey Odhner; Joseph M. McDonough; Carina Lott; Abbie Clark; Jason B. Anari; Patrick J. Cahill; Drew A. Torigian (Image-Guided Procedures, 2023)

Auto-segmentation of thoracic brachial plexuses for radiation therapy planning. - Ademola Enitan Ilesanmi; Jayaram K. Udupa; Yubing Tong; Tiange Liu; Dewey Odhner; Gargi Pednekar; Sanghita Nag; Sharon Lewis; Joe Camaratta; Steve Owens; Drew A. Torigian (Image-Guided Procedures, 2023)

GazeGNN: A Gaze-Guided Graph Neural Network for Disease Classification. - Bin Wang 068; Hongyi Pan; Armstrong Aboah; Zheyuan Zhang; Ahmet Enis Çetin; Drew A. Torigian; Baris Turkbey; Elizabeth A. Krupinski; Jayaram K. Udupa; Ulas Bagci (CoRR, 2023)

GazeGNN: A Gaze-Guided Graph Neural Network for Chest X-ray Classification. - Bin Wang 068; Hongyi Pan; Armstrong Aboah; Zheyuan Zhang; Elif Keles; Drew A. Torigian; Baris Turkbey; Elizabeth A. Krupinski; Jayaram K. Udupa; Ulas Bagci (WACV, 2024)

XctDiff: Reconstruction of CT Images with Consistent Anatomical Structures from a Single Radiographic Projection Image. - Qingze Bai; Tiange Liu; Zhi Liu; Yubing Tong; Drew A. Torigian; Jayaram K. Udupa (CoRR, 2024)

Efficient MedSAMs: Segment Anything in Medical Images on Laptop. - Jun Ma 016; Feifei Li 010; Sumin Kim; Reza Asakereh; Bao-Hiep Le; Dang-Khoa Nguyen-Vu; Alexander Pfefferle; Muxin Wei; Ruochen Gao; Donghang Lyu; Songxiao Yang; Lennart Purucker; et al. (CoRR, 2024)

VSmTrans: A hybrid paradigm integrating self-attention and convolution for 3D medical image segmentation. - Tiange Liu; Qingze Bai; Drew A. Torigian; Yubing Tong; Jayaram K. Udupa (Medical Image Anal., 2024)

GA-Net: A geographical attention neural network for the segmentation of body torso tissue composition. - Jian Dai; Tiange Liu; Drew A. Torigian; Yubing Tong; Shiwei Han; Pengju Nie; Jing Zhang; Ran Li; Fei Xie; Jayaram K. Udupa (Medical Image Anal., 2024)

Eyes Tell the Truth: GazeVal Highlights Shortcomings of Generative AI in Medical Imaging. - David C. Wong 005; Bin Wang 068; Gorkem Durak; Marouane Tliba; Akshay Chaudhari; Aladine Chetouani; Ahmet Enis Çetin; Cagdas Topel; Nicolo Gennaro; Camila Lopes Vendrami; Tugce Agirlar Trabzonlu; Amir Ali Rahsepar; et al. (CVPR Workshops, 2025)

Predicting Risk of Pulmonary Fibrosis Formation in PASC Patients. - Wanying Dou; Gorkem Durak; Koushik Biswas; Ziliang Hong; Andrea Mia Bejar; Elif Keles; Kaan Akin; Sukru Mehmet Erturk; Alpay Medetalibeyoglu; Marc Sala; Alexander Misharin; Hatice Savas; et al. (CoRR, 2025)

Segment Anything for Video: A Comprehensive Review of Video Object Segmentation and Tracking from Past to Future. - Guoping Xu; Jayaram K. Udupa; Yajun Yu; Hua-Chieh Shao; Songlin Zhao; Wei Liu; You Zhang (CoRR, 2025)