A new class of constitutively active super-enhancers is associated with fast recovery of 3D chromatin loops. - Jayoung Ryu; Hyun-Woong Kim; Dongchan Yang; Andrew J. Lee; Inkyung Jung (BMC Bioinform., 2019)

Cross-modality Matching and Prediction of Perturbation Responses with Labeled Gromov-Wasserstein Optimal Transport. - Jayoung Ryu; Charlotte Bunne; Luca Pinello; Aviv Regev; Romain Lopez (AISTATS, 2025)