GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics. - Delphine Samson; Fabrice Legeai; Emmanuelle Karsenty; Sébastien Reboux; Jean-Baptiste Veyrieras; Jeremy Just; Emmanuel Barillot (Nucleic Acids Res., 2003)

MetaQTL: a package of new computational methods for the meta-analysis of QTL mapping experiments. - Jean-Baptiste Veyrieras; Bruno Goffinet; Alain Charcosset (BMC Bioinform., 2007)

A Comprehensive Microbial Knowledge Base to Support the Development of In-vitro Diagnostic Solutions in Infectious Diseases. - Magali Jaillard; Stéphane Schicklin; Audrey Larue-Triolet; Jean-Baptiste Veyrieras (I-SEMANTICS (Posters & Demos), 2013)

MicroMass. - Pierre Mahé; Jean-Baptiste Veyrieras (UCI Machine Learning Repository, 2013)

On Learning Matrices with Orthogonal Columns or Disjoint Supports. - Kevin Vervier; Pierre Mahé; Alexandre d'Aspremont; Jean-Baptiste Veyrieras; Jean-Philippe Vert (ECML/PKDD (3), 2014)

De novo finished 2.8 Mbp Staphylococcus aureus genome assembly from 100 bp short and long range paired-end reads. - David Hernández; Ryan Tewhey; Jean-Baptiste Veyrieras; Laurent Farinelli; Magne Østerås; Patrice François; Jacques Schrenzel (Bioinform., 2014)

Automatic identification of mixed bacterial species fingerprints in a MALDI-TOF mass-spectrum. - Pierre Mahé; Maud Arsac; Sonia Chatellier; Valérie Monnin; Nadine Perrot; Sandrine Mailler; Victoria Girard; Mahendrasingh Ramjeet; Jérémy Surre; Bruno Lacroix; Alex van Belkum; Jean-Baptiste Veyrieras (Bioinform., 2014)

A strategy to build and validate a prognostic biomarker model based on RT-qPCR gene expression and clinical covariates. - Maud Tournoud; Audrey Larue; Marie-Angelique Cazalis; Fabienne Venet; Alexandre Pachot; Guillaume Monneret; Alain Lepape; Jean-Baptiste Veyrieras (BMC Bioinform., 2015)

Benchmark of structured machine learning methods for microbial identification from mass-spectrometry data. - Kevin Vervier; Pierre Mahé; Jean-Baptiste Veyrieras; Jean-Philippe Vert (CoRR, 2015)

Optimization of alignment-based methods for taxonomic binning of metagenomics reads. - Magali Jaillard; Maud Tournoud; Faustine Meynier; Jean-Baptiste Veyrieras (Bioinform., 2016)

Large-scale machine learning for metagenomics sequence classification. - Kevin Vervier; Pierre Mahé; Maud Tournoud; Jean-Baptiste Veyrieras; Jean-Philippe Vert (Bioinform., 2016)