Stereoscopic reconfiguration for 3D displays. - Jean-Christophe Houde; Pierre-Marc Jodoin; François Deschênes (SD&A, 2012)

Tractometer: Online Evaluation System for Tractography. - Marc-Alexandre Côté; Arnaud Boré; Gabriel Girard; Jean-Christophe Houde; Maxime Descoteaux (MICCAI (1), 2012)

Tractometer: Towards validation of tractography pipelines. - Marc-Alexandre Côté; Gabriel Girard; Arnaud Boré; Eleftherios Garyfallidis; Jean-Christophe Houde; Maxime Descoteaux (Medical Image Anal., 2013)

Visualization of Diffusion Propagator and Multiple Parameter Diffusion Signal. - Olivier Vaillancourt; Maxime Chamberland; Jean-Christophe Houde; Maxime Descoteaux (Visualization and Processing of Higher Order Descriptors for Multi-Valued Data, 2015)

Strengths and weaknesses of state of the art fiber tractography pipelines - A comprehensive in-vivo and phantom evaluation study using Tractometer. - Peter F. Neher; Maxime Descoteaux; Jean-Christophe Houde; Bram Stieltjes; Klaus H. Maier-Hein (Medical Image Anal., 2015)

A new compression format for fiber tracking datasets. - Caroline Presseau; Pierre-Marc Jodoin; Jean-Christophe Houde; Maxime Descoteaux (NeuroImage, 2015)

Learn to Track: Deep Learning for Tractography. - Philippe Poulin; Marc-Alexandre Côté; Jean-Christophe Houde; Laurent Petit; Peter F. Neher; Klaus H. Maier-Hein; Hugo Larochelle; Maxime Descoteaux (MICCAI (1), 2017)

Fiberweb: Diffusion Visualization and Processing in the Browser. - Louis-Philippe Ledoux; Félix C. Morency; Martin Cousineau; Jean-Christophe Houde; Kevin Whittingstall; Maxime Descoteaux (Frontiers Neuroinformatics, 2017)

Visualization, Interaction and Tractometry: Dealing with Millions of Streamlines from Diffusion MRI Tractography. - Francois Rheault; Jean-Christophe Houde; Maxime Descoteaux (Frontiers Neuroinformatics, 2017)

Fiber tractography using machine learning. - Peter F. Neher; Marc-Alexandre Côté; Jean-Christophe Houde; Maxime Descoteaux; Klaus H. Maier-Hein (NeuroImage, 2017)

Tractography Challenge ISMRM 2015 b=3000s/mm² Data. - Peter F. Neher; Jean-Christophe Houde; Maxime Descoteaux; Klaus H. Maier-Hein (Zenodo, 2017)

Quantification of apparent axon density and orientation dispersion in the white matter of youth born with congenital heart disease. - Kaitlyn Easson; Charles V. Rohlicek; Jean-Christophe Houde; Guillaume Gilbert; Christine Saint-Martin; Kimberly Fontes; Annette Majnemer; Ariane Marelli; Pia Wintermark; Maxime Descoteaux; Marie Brossard-Racine (NeuroImage, 2020)

TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity. - Guillaume Theaud; Jean-Christophe Houde; Arnaud Boré; François Rheault; Félix C. Morency; Maxime Descoteaux (NeuroImage, 2020)

bids-specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2023)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2024)

ComBAT Harmonization for diffusion MRI: Challenges and Best Practices. - Pierre-Marc Jodoin; Manon Edde; Gabriel Girard; Félix Dumais; Guillaume Theaud; Matthieu Dumont; Jean-Christophe Houde; Yoan David; Maxime Descoteaux (CoRR, 2025)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Agnese Zazio; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; et al. (Zenodo, 2025)