Image segmentation by wavelet-based automatic threshold selection. - Jean-Christophe Olivo (VCIP, 1993)

Automatic Threshold Selection Using the Wavelet Transform. - Jean-Christophe Olivo (CVGIP Graph. Model. Image Process., 1994)

Automatic detection of spots in biological images by a wavelet-based selective filtering technique. - Jean-Christophe Olivo (ICIP (1), 1996)

Adaptive detection for tracking moving biological objects in video microscopy sequences. - Sébastien Nguyen Ngoc; Frédéric Briquet-Laugier; Christian Boulin; Jean-Christophe Olivo (ICIP (3), 1997)

A Wavelet-Based Multiresolution Method to Automatically Register Images. - Joachim Deubler; Jean-Christophe Olivo (J. Math. Imaging Vis., 1997)

Active Contours for the Movement and Motility Analysis of Biological Objects. - Vannary Meas-Yedid; Jean-Christophe Olivo-Marin (ICIP, 2000)

Three dimensional spot detection by multiscale analysis. - G. Cuartero; Vincent Galy; Ulf Nehrbass; Vannary Meas-Yedid; Jean-Christophe Olivo-Marin (ICIP (1), 2001)

Color Image Segmentation Based on Markov Random Field Clustering for Histological Image Analysis. - Vannary Meas-Yedid; Sorin Tilie; Jean-Christophe Olivo-Marin (ICPR (1), 2002)

Improving Active Contours for Segmentation and Tracking of Motile Cells in Videomicroscopy. - Christophe Zimmer; Elisabeth Labruyere; Vannary Meas-Yedid; Nancy Guillen; Jean-Christophe Olivo-Marin (ICPR (2), 2002)

Quantitative analysis of cellular shape and motility with improved active contours. - Christophe Zimmer; Elisabeth Labruyere; Vannary Meas-Yedid; Nancy Guillen; Jean-Christophe Olivo-Marin (ISBI, 2002)

Extraction of spots in biological images using multiscale products. - Jean-Christophe Olivo-Marin (Pattern Recognit., 2002)

Segmentation and Tracking of Migrating Cells in Videomicroscopy with Parametric Active Contours: A Tool for Cell-Based Drug Testing. - Christophe Zimmer; Elisabeth Labruyere; Vannary Meas-Yedid; Nancy Guillen; Jean-Christophe Olivo-Marin (IEEE Trans. Medical Imaging, 2002)

Tracking of multiple fluorescent biological objects in three dimensional video microscopy. - Auguste Genovesio; Bo Zhang 017; Jean-Christophe Olivo-Marin (ICIP (1), 2003)

A Quantification Tool to Analyse Stained Cell Cultures. - Estelle Glory; A. Faure; Vannary Meas-Yedid; Florence Cloppet; Christian Pinset; Georges Stamon; Jean-Christophe Olivo-Marin (ICIAR (2), 2004)

Adaptive gating in gaussian bayesian multi-target tracking. - Auguste Genovesio; Ziad Belhassine; Jean-Christophe Olivo-Marin (ICIP, 2004)

Split and Merge Data Association Filter for Dense Multi-target Tracking. - Auguste Genovesio; Jean-Christophe Olivo-Marin (ICPR (4), 2004)

Automatic Color Space Selection for Biological Image Segmentation. - Vannary Meas-Yedid; Estelle Glory; E. Morelon; Christian Pinset; Georges Stamon; Jean-Christophe Olivo-Marin (ICPR (3), 2004)

A Deconvolution Method for Confocal Microscopy with Total Variation Regularization. - Nicolas Dey; Laure Blanc-Féraud; Josiane Zerubia; Christophe Zimmer; Jean-Christophe Olivo-Marin; Zvi Kam (ISBI, 2004)

Interacting Multiple Model Based Method to Track Moving Fluorescent Biological Spots. - Jean-Christophe Olivo-Marin; Auguste Genovesio; Bo Zhang 017 (ISBI, 2004)

Tracking Fluorescent Cells With Coupled Geometric Active Contours. - Christophe Zimmer; Jean-Christophe Olivo-Marin; Bo Zhang 017 (ISBI, 2004)

A Quantitative Criterion to Evaluate Color Segmentations Application to Cytological Images. - Estelle Glory; Vannary Meas-Yedid; Christian Pinset; Jean-Christophe Olivo-Marin; Georges Stamon (ACIVS, 2005)

Coupled Parametric Active Contours. - Christophe Zimmer; Jean-Christophe Olivo-Marin (IEEE Trans. Pattern Anal. Mach. Intell., 2005)

Segmenting and Tracking Fluorescent Cells in Dynamic 3-D Microscopy With Coupled Active Surfaces. - Alexandre Dufour; V. Shinin; S. Tajbakhsh; N. Guillen-Aghion; Jean-Christophe Olivo-Marin; Christophe Zimmer (IEEE Trans. Image Process., 2005)

An Overview of Image Analysis in Multidimensional Biological Microscopy. - Jean-Christophe Olivo-Marin (ICASSP (5), 2006)

Biophysical Active Contours for Cell Tracking I: Tension and Bending. - Jacques Pecreaux; Christophe Zimmer; Jean-Christophe Olivo-Marin (ICIP, 2006)

Automated image-based screening of cell cultures for cell therapy. - Estelle Glory; Vannary Meas-Yedid; Georges Stamon; Christian Pinset; Jean-Christophe Olivo-Marin (ISBI, 2006)

Automated super-resolution detection of fluorescent rods in 2D. - Bo Zhang 017; Jost Enninga; Jean-Christophe Olivo-Marin; Christophe Zimmer (ISBI, 2006)

On the digital trail of mobile cells. - Christophe Zimmer; Bo Zhang 017; Alexandre Dufour; Ayméric Thébaud; Sylvain Berlemont; Vannary Meas-Yedid; Jean-Christophe Olivo-Marin (IEEE Signal Process. Mag., 2006)

Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots. - Auguste Genovesio; Tim Liedl; Valentina Emiliani; Wolfgang J. Parak; M. Coppey-Moisan; Jean-Christophe Olivo-Marin (IEEE Trans. Image Process., 2006)

Detection of Curvilinear Objects in Noisy Image using Feature-Adapted Beamlet Transform. - Sylvain Berlemont; Aaron Bensimon; Jean-Christophe Olivo-Marin (ICASSP (1), 2007)

Feature-Adapted Fast Slant Stack. - Sylvain Berlemont; Aaron Bensimon; Jean-Christophe Olivo-Marin (ICIP (4), 2007)

Multiscale Variance-Stabilizing Transform for Mixed-Poisson-Gaussian Processes and its Applications in Bioimaging. - Bo Zhang 017; Jalal Fadili; Jean-Luc Starck; Jean-Christophe Olivo-Marin (ICIP (6), 2007)

Tracking live cells in 4D microscopy: From active surfaces to active meshes. - Alexandre Dufour; Jean-Christophe Olivo-Marin (ACSCC, 2008)

Session MA2: Advances in bioimaging and analysis. - Jean-Christophe Olivo-Marin (ACSCC, 2008)

Feature-aided particle tracking. - Nicolas Chenouard; Isabelle Bloch; Jean-Christophe Olivo-Marin (ICIP, 2008)

Morphological source separation for particle tracking in complex biological environments. - Nicolas Chenouard; Samantha Vernhettes; Isabelle Bloch; Jean-Christophe Olivo-Marin (ICPR, 2008)

Automated quantification of cell endocytosis using active contours and wavelets. - Alexandre Dufour; Vannary Meas-Yedid; Alexandre Grassart; Jean-Christophe Olivo-Marin (ICPR, 2008)

Fast and automatic reconstruction of structured illumination microscopy images with multiscale products. - Clovis Tauber; Pedro Felipe Gardeazabal Rodriguez; Vincent Loriette; Nicolas Chenouard; Benoit Dubertret; Jean-Christophe Olivo-Marin (ICPR, 2008)

Detection of full length microtubules in live microscopy images. - Sylvain Berlemont; Régis Tournebize; Aaron Bensimon; Jean-Christophe Olivo-Marin (ISBI, 2008)

A multi-threaded program architecture for an asynchronous and highly responsive GUI for automatic neuronal survival quantification. - Fabrice de Chaumont; Nicolas Chenouard; Aurelie Mouret; Pierre Marie Lledo; Jean-Christophe Olivo-Marin (ISBI, 2008)

Improving single particle localization with an empirically calibrated Gaussian kernel. - Marcio de Moraes Marim; Bo Zhang 017; Jean-Christophe Olivo-Marin; Christophe Zimmer (ISBI, 2008)

Blind deconvolution for diffraction-limited fluorescence microscopy. - Praveen Pankajakshan; Bo Zhang 017; Laure Blanc-Féraud; Zvi Kam; Jean-Christophe Olivo-Marin; Josiane Zerubia (ISBI, 2008)

Statistical colocalization in biological imaging with false discovery control. - Bo Zhang 017; Nicolas Chenouard; Jean-Christophe Olivo-Marin; Vannary Meas-Yedid (ISBI, 2008)

Tracking articulated objects with physics engines. - Fabrice de Chaumont; Alexandre Dufour; Jean-Christophe Olivo-Marin (ICIP, 2009)

Particle tracking in fluorescent microscopy images improved by morphological source separation. - Nicolas Chenouard; Isabelle Bloch; Jean-Christophe Olivo-Marin (ICIP, 2009)

Multiple hypothesis tracking in cluttered condition. - Nicolas Chenouard; Isabelle Bloch; Jean-Christophe Olivo-Marin (ICIP, 2009)

Compressed Sensing in microscopy with random projections in the Fourier domain. - Marcio de Moraes Marim; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ICIP, 2009)

Using Physics Engines to Track Objects in Images. - Fabrice de Chaumont; Alexandre Dufour; Pierre Serreau; Johnathan Chabout; Sylvia Münter; Friedrich Frischknecht; Sylvie Granon; Jean-Christophe Olivo-Marin (ISBI, 2009)

Multiple Hypothesis Tracking in Microscopy Images. - Nicolas Chenouard; Isabelle Bloch; Jean-Christophe Olivo-Marin (ISBI, 2009)

A Compressed Sensing Approach for Biological Microscopic Image Processing. - Marcio de Moraes Marim; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ISBI, 2009)

Tracking multiple articulated objects using physics engines: Improvement using multi scale decomposition and quadtrees. - Fabrice de Chaumont; Stephane Dallongeville; Nicolas Chenouard; Jean-Christophe Olivo-Marin (ICIP, 2010)

Curvelet analysis of kymograph for tracking bi-directional particles in fluorescence microscopy images. - Nicolas Chenouard; Johanna Buisson; Isabelle Bloch; Philippe Bastin; Jean-Christophe Olivo-Marin (ICIP, 2010)

Improving histology images segmentation through spatial constraints and supervision. - Nicolas Hervé; Aude Servais; Eric Thervet; Jean-Christophe Olivo-Marin; Vannary Meas-Yedid (ICIP, 2010)

Compressed sensing for digital holographic microscopy. - Marcio de Moraes Marim; Michael Atlan; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ISBI, 2010)

Compressed Sensing with off-axis frequency-shifting holography - Marcio de Moraes Marim; Michael Atlan; Elsa D. Angelini; Jean-Christophe Olivo-Marin (CoRR, 2010)

Combining Local Filtering and Multiscale Analysis for Edge, Ridge, and Curvilinear Objects Detection. - Sylvain Berlemont; Jean-Christophe Olivo-Marin (IEEE Trans. Image Process., 2010)

Spherical Harmonics based extraction and annotation of cell shape in 3D time-lapse microscopy sequences. - Christel Ducroz; Jean-Christophe Olivo-Marin; Alexandre Dufour (EMBC, 2011)

Numerical evaluation of sampling bounds for near-optimal reconstruction in compressed sensing. - Yoann Le Montagner; Marcio de Moraes Marim; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ICIP, 2011)

Image filtering using anisotropic structure tensor for cell membrane enhancement in 3D microscopy. - Sorin Pop; Alexandre Dufour; Jean-Christophe Olivo-Marin (ICIP, 2011)

ICY: A new open-source community image processing software. - Fabrice de Chaumont; Stephane Dallongeville; Jean-Christophe Olivo-Marin (ISBI, 2011)

Statistical color texture descriptors for histological images analysis. - Nicolas Hervé; Aude Servais; Eric Thervet; Jean-Christophe Olivo-Marin; Vannary Meas-Yedid (ISBI, 2011)

Comparison of reconstruction algorithms in compressed sensing applied to biological imaging. - Yoann Le Montagner; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ISBI, 2011)

Wavefront sensing for aberration modeling in fluorescence macroscopy. - Praveen Pankajakshan; Alain Dieterlen; Gilbert Engler; Zvi Kam; Laure Blanc-Féraud; Josiane Zerubia; Jean-Christophe Olivo-Marin (ISBI, 2011)

A fast and automated framework for extraction of nuclei from cluttered 3D images in fluorescence microscopy. - Sorin Pop; Alexandre Dufour; Jean-Francois Le Garrec; Chiara V. Ragni; Margaret E. Buckingham; Sigolene M. Meilhac; Jean-Christophe Olivo-Marin (ISBI, 2011)

Special issue on whole slide microscopic image processing. - Olivier Lezoray; Metin N. Gurcan; Ali Can; Jean-Christophe Olivo-Marin (Comput. Medical Imaging Graph., 2011)

Trends in Bioimaging and Signal Processing [In the Spotlight]. - Jean-Christophe Olivo-Marin; Michael Unser; Laure Blanc-Féraud; Andrew Laine; Boudewijn P. F. Lelieveldt (IEEE Signal Process. Mag., 2011)

3-D Active Meshes: Fast Discrete Deformable Models for Cell Tracking in 3-D Time-Lapse Microscopy. - Alexandre Dufour; Roman Thibeaux; Elisabeth Labruyere; Nancy Guillen; Jean-Christophe Olivo-Marin (IEEE Trans. Image Process., 2011)

Fluid optical flow for forces and pressure field estimation in cellular biology. - Timothee Lecomte; Roman Thibeaux; Nancy Guillen; Alexandre Dufour; Jean-Christophe Olivo-Marin (ICIP, 2012)

Video reconstruction using compressed sensing measurements and 3d total variation regularization for bio-imaging applications. - Yoann Le Montagner; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ICIP, 2012)

Characterization of cell shape and deformation in 3D using Spherical Harmonics. - Christel Ducroz; Jean-Christophe Olivo-Marin; Alexandre Dufour (ISBI, 2012)

Bayesian Estimation for Optimized Structured Illumination Microscopy. - François Orieux; Eduardo Sepulveda; Vincent Loriette; Benoit Dubertret; Jean-Christophe Olivo-Marin (IEEE Trans. Image Process., 2012)

Icy: A user-friendly environment for algorithm development and deployment. - Fabrice de Chaumont; Stephane Dallongeville; Thomas Provoost; Timothee Lecomte; Alexandre Dufour; Jean-Christophe Olivo-Marin (EUSIPCO, 2013)

Automatic detection of 3D cell protrusions using spherical wavelets. - Christel Ducroz; Jean-Christophe Olivo-Marin; Alexandre Dufour (ICIP, 2013)

A statistical analysis of spatial colocalization using Ripley's K function. - Thibault Lagache; Vannary Meas-Yedid; Jean-Christophe Olivo-Marin (ISBI, 2013)

Phase retrieval with sparsity priors and application to microscopy video reconstruction. - Yoann Le Montagner; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ISBI, 2013)

Image-based representation and modeling of spatiotemporal cell dynamics. - Ge Yang; Jean-Christophe Olivo-Marin (ISBI, 2013)

Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart. - Sorin Pop; Alexandre Dufour; Jean-Francois Le Garrec; Chiara V. Ragni; Clémire Cimper; Sigolene M. Meilhac; Jean-Christophe Olivo-Marin (Bioinform., 2013)

Multiple Hypothesis Tracking for Cluttered Biological Image Sequences. - Nicolas Chenouard; Isabelle Bloch; Jean-Christophe Olivo-Marin (IEEE Trans. Pattern Anal. Mach. Intell., 2013)

Fluid dynamics modeling of cell and membrane deformations. - Costanza Simoncini; Timothee Lecomte; Roman Thibeaux; Nancy Guillen; Alexandre Dufour; Jean-Christophe Olivo-Marin (ISBI, 2014)

3D shape analysis using overcomplete spherical wavelets: Application to BLEB detection in cell biology. - Robin Tournemenne; Christel Ducroz; Jean-Christophe Olivo-Marin; Alexandre Dufour (ISBI, 2014)

A statistical analysis of spatial clustering along cell filaments using Ripley's K function. - Mariña López-Yunta; Thibault Lagache; Julien Santi-Rocca; Philippe Bastin; Jean-Christophe Olivo-Marin (ISBI, 2014)

An Unbiased Risk Estimator for Image Denoising in the Presence of Mixed Poisson-Gaussian Noise. - Yoann Le Montagner; Elsa D. Angelini; Jean-Christophe Olivo-Marin (IEEE Trans. Image Process., 2014)

Using steerable wavelets and minimal paths to reconstruct automatically filaments in fluorescence imaging. - Thibault Lagache; Quentin Marcou; Antoine Bardonnet; Brice Rotureau; Philippe Bastin; Jean-Christophe Olivo-Marin (ICIP, 2015)

Image denoising by multiple compressed sensing reconstructions. - William Meiniel; Yoann Le Montagner; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ISBI, 2015)

Signal Processing Challenges in Quantitative 3-D Cell Morphology: More than meets the eye. - Alexandre Cecilien Dufour; Tzu-Yu Liu; Christel Ducroz; Robin Tournemenne; Beryl Cummings; Roman Thibeaux; Nancy Guillen; Alfred O. Hero III; Jean-Christophe Olivo-Marin (IEEE Signal Process. Mag., 2015)

An approach for detection of glomeruli in multisite digital pathology. - Raphaël Marée; Stephane Dallongeville; Jean-Christophe Olivo-Marin; Vannary Meas-Yedid (ISBI, 2016)

Sparsity-based simplification of spectral-domain optical coherence tomography images of cardiac samples. - William Meiniel; Yu Gan 003; Christine P. Hendon; Jean-Christophe Olivo-Marin; Andrew F. Laine; Elsa D. Angelini (ISBI, 2016)

Biophysical measurements in 2D and 3D live cell imaging using fluid dynamics and optical flow. - Aleix Boquet-Pujadas; Maria Manich; Nancy Guillen; Jean-Christophe Olivo-Marin; Alexandre Cecilien Dufour (ISBI, 2016)

Introduction to the Issue on Advanced Signal Processing in Microscopy and Cell Imaging. - Charles Kervrann; Scott T. Acton; Jean-Christophe Olivo-Marin; Carlos Oscar Sánchez Sorzano; Michael Unser (IEEE J. Sel. Top. Signal Process., 2016)

A Guided Tour of Selected Image Processing and Analysis Methods for Fluorescence and Electron Microscopy. - Charles Kervrann; Carlos Oscar Sánchez Sorzano; Scott T. Acton; Jean-Christophe Olivo-Marin; Michael Unser (IEEE J. Sel. Top. Signal Process., 2016)

Unbiased analysis of mouse social behaviour using unsupervised machine learning. - Oscar Bauer; Anne-Marie Le Sourd; Giacomo Nardi; Thomas Bourgeron; Jean-Christophe Olivo-Marin; Elodie Ey; Fabrice de Chaumont (ISBI, 2017)

Quad-edge active contours for biomedical image segmentation. - Daniel F. Gonzalez Obando; Lauriane Rohfritsch; Manon Faure; Lydia Danglot; Vannary Meas-Yedid; Jean-Christophe Olivo-Marin; Alexandre Cecilien Dufour (ISBI, 2017)

Combining global tracking with statistical classification to analyze endocytosis dynamics using TIRF microscopy. - Thibault Lagache; Giacomo Nardi; Laetitia Bertot; Alexandre Grassart; Nathalie Sauvonnet; Jean-Christophe Olivo-Marin (ISBI, 2017)

Reducing data acquisition for fast Structured Illumination Microscopy using Compressed Sensing. - William Meiniel; Piernicola Spinicelli; Elsa D. Angelini; Alexandra Fragola; Vincent Loriette; François Orieux; Eduardo Sepulveda; Jean-Christophe Olivo-Marin (ISBI, 2017)

Multi-staining registration of large histology images. - Daniel F. Gonzalez Obando; Astri Frafjord; Inger Oynebraten; Alexandre Corthay; Jean-Christophe Olivo-Marin; Vannary Meas-Yedid (ISBI, 2017)

Unsupervised analysis of mouse social behaviour reveals how hyperactivity impacts social aspects in a mouse model of autism. - Oscar Bauer; Thomas Bourgeron; Jean-Christophe Olivo-Marin; Elodie Ey; Fabrice de Chaumont (ISBI, 2018)

Basal cell carcinoma detection in full field OCT images using convolutional neural networks. - Diana Mandache; E. Dalimier; J. R. Durkin; C. Boceara; Jean-Christophe Olivo-Marin; Vannary Meas-Yedid (ISBI, 2018)

Morphological operations on polygons using straight skeletons for digital pathology. - Daniel Felipe Gonzalez Obando; Jean-Christophe Olivo-Marin; Vannary Meas-Yedid (ISBI, 2018)

Denoising of Microscopy Images: A Review of the State-of-the-Art, and a New Sparsity-Based Method. - William Meiniel; Jean-Christophe Olivo-Marin; Elsa D. Angelini (IEEE Trans. Image Process., 2018)

Vector-Based Morphological Operations on Polygons Using Straight Skeletons for Digital Pathology. - Daniel Felipe Gonzalez Obando; Jean-Christophe Olivo-Marin; Laurent Wendling; Vannary Meas-Yedid (DGCI, 2019)

Icytomine: A User-Friendly Tool for Integrating Workflows on Whole Slide Images. - Daniel Felipe Gonzalez Obando; Diana Mandache; Jean-Christophe Olivo-Marin; Vannary Meas-Yedid (ECDP, 2019)

Tracking and line integration of diffuse cellular subdomains by mesh advection. - Aleix Boquet-Pujadas; Cecilia Grimaldi; Erez Raz; Jean-Christophe Olivo-Marin (EMBC, 2019)

Modeling Shape Dynamics During Cell Motility in Microscopy Videos. - Ximu Deng; Rituparna Sarkar; Elisabeth Labruyere; Jean-Christophe Olivo-Marin; Anuj Srivastava (ICIP, 2020)

Extended Depth of Field Preserving Color Fidelity For Automated Digital Cytology. - Alexandre Bouyssoux; Riadh Fezzani; Jean-Christophe Olivo-Marin (ICPR, 2020)

Learning to segment clustered amoeboid cells from brightfield microscopy via multi-task learning with adaptive weight selection. - Rituparna Sarkar; Suvadip Mukherjee; Elisabeth Labruyère; Jean-Christophe Olivo-Marin (ICPR, 2020)

Generalizing the Statistical Analysis of Objects' Spatial Coupling in Bioimaging. - Suvadip Mukherjee; Catalina Gonzalez-Gomez; Lydia Danglot; Thibault Lagache; Jean-Christophe Olivo-Marin (IEEE Signal Process. Lett., 2020)

Morphological Reconstruction of Detached Dendritic Spines via Geodesic Path Prediction. - Sammit Jain; Suvadip Mukherjee; Lydia Danglot; Jean-Christophe Olivo-Marin (ISBI, 2021)

A Robust and Versatile Framework to Compare Spike Detection Methods in Calcium Imaging of Neuronal Activity. - Samuel Kubler; Suvadip Mukherjee; Jean-Christophe Olivo-Marin; Thibault Lagache (ISBI, 2021)

Leveraging Global Diagnosis For Tumor Localization In Dynamic Cell Imaging Of Breast Cancer Tissue Towards Fast Biopsying. - Diana Mandache; Emilie Benoit á la Guillaume; Marie-Christine Mathieu; Jean-Christophe Olivo-Marin; Vannary Meas-Yedid (ISBI, 2021)

Blind Source Separation In Dynamic Cell Imaging Using Non-Negative Matrix Factorization Applied To Breast Cancer Biopsies. - Diana Mandache; Emilie Benoit á la Guillaume; Jean-Christophe Olivo-Marin; Vannary Meas-Yedid (ISBI, 2021)

A Min-Max Based Hyperparameter Estimation For Domain-Adapted Segmentation Of Amoeboid Cells. - Suvadip Mukherjee; Rituparna Sarkar; Elisabeth Labruyère; Jean-Christophe Olivo-Marin (ISBI, 2021)

Nu3D: 3D Nuclei Segmentation from Light-Sheet Microscopy Images of the Embryonic Heart. - Rituparna Sarkar; Daniel Darby; Héloise Foucambert; Sigolene M. Meilhac; Jean-Christophe Olivo-Marin (ISBI, 2021)

Bioimage Analysis and Cell Motility. - Aleix Boquet-Pujadas; Jean-Christophe Olivo-Marin; Nancy Guillen (Patterns, 2021)

Evaluating the Stability of Spatial Keypoints via Cluster Core Correspondence Index. - Suvadip Mukherjee; Thibault Lagache; Jean-Christophe Olivo-Marin (IEEE Trans. Image Process., 2021)

Smart Learning of Click and Refine for Nuclei Segmentation on Histology Images. - Antoine Habis; Vannary Meas-Yedid; Daniel Felipe Gonzalez Obando; Jean-Christophe Olivo-Marin; Elsa D. Angelini (ICIP, 2022)

PDE-Constrained Optimization for Nuclear Mechanics. - Yekta Kesenci; Aleix Boquet-Pujadas; Emma van Bodegraven; Sandrine Étienne-Manneville; Elisabeth Labruyère; Jean-Christophe Olivo-Marin (ICIP, 2022)

The Lifecycle of a Neural Network in the Wild: A Multiple Instance Learning Study on Cancer Detection from Breast Biopsies Imaged with Novel Technique. - Diana Mandache; Emilie Benoit á la Guillaume; Y. Badachi; Jean-Christophe Olivo-Marin; Vannary Meas-Yedid (ICIP, 2022)

Characterizing Cell Shape Distributions Using k-Mode Kernel Mixtures. - Ximu Deng; Anuj Srivastava; Rituparna Sarkar; Elisabeth Labruyère; Jean-Christophe Olivo-Marin (ICPR, 2022)

Cell Instance Segmentation Using Z-Stacks in Digital Cytology. - Alexandre Bouyssoux; Riadh Fezzani; Jean-Christophe Olivo-Marin (ISBI, 2022)

Characterizing Cell Populations Using Statistical Shape Modes. - Ximu Deng; Rituparna Sarkar; Elisabeth Labruyere; Jean-Christophe Olivo-Marin; Anuj Srivastava (ISBI, 2022)

Statistical Coupling Between time Point-Processes. - Samuel Kubler; Jean-Christophe Olivo-Marin; Thibault Lagache (ISBI, 2022)

Spatial Analysis For Histopathology: A Statistical Approach. - Suvadip Mukherjee; Vannary Meas-Yedid; Marc Bokobza; Thibault Lagache; Alexandre Corthay; Jean-Christophe Olivo-Marin (ISBI, 2022)

Ensemble Multiple Instance Learning for Bladder Cancer Diagnosis. - Alexandre Bouyssoux; Riadh Fezzani; Jean-Christophe Olivo-Marin (ISBI, 2023)

Sparse Non-Negative Matrix Factorization for Preclinical Bioluminescent Imaging. - Erwan Dereure; Christophe Kervazo; Johanne Seguin; Anikitos Garofalakis; Nathalie Mignet; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ISBI, 2023)

Probing Intracellular Elasticity with Minimal-Hessian Registration. - Yekta Kesenci; Aleix Boquet-Pujadas; Michael Unser; Jean-Christophe Olivo-Marin (ISBI, 2023)

Cross-Modal Contrastive Learning for Robust Representation of the Extracellular Matrix in Static and Dynamic Full-Field OCT Images. - Diana Mandache; Emilie Benoit á la Guillaume; Jean-Christophe Olivo-Marin; Vannary Meas-Yedid (ISBI, 2023)

Tracking Intermittent Particles with Self-Learned Visual Features. - Raphael Reme; Victor Piriou; Alison Hanson; Rafael Yuste; Alasdair Newson; Elsa D. Angelini; Jean-Christophe Olivo-Marin; Thibault Lagache (ISBI, 2023)

Domain Adapted Multitask Learning for Segmenting Amoeboid Cells in Microscopy. - Suvadip Mukherjee; Rituparna Sarkar; Maria Manich; Elisabeth Labruyère; Jean-Christophe Olivo-Marin (IEEE Trans. Medical Imaging, 2023)

Reformulating Optical Flow to Solve Image-Based Inverse Problems and Quantify Uncertainty. - Aleix Boquet-Pujadas; Jean-Christophe Olivo-Marin (IEEE Trans. Pattern Anal. Mach. Intell., 2023)

From Nano to Macro: An overview of the IEEE Bio Image and Signal Processing Technical Committee. - Selin Aviyente; Alejandro F. Frangi; Erik Meijering; Arrate Muñoz-Barrutia; Michael Liebling; Dimitri Van De Ville; Jean-Christophe Olivo-Marin; Jelena Kovacevic; Michael Unser (IEEE Signal Process. Mag., 2023)

Wavelet-Based Sparse Non-Negative Matrix Factorization for Bioluminescent Imaging Unmixing. - Erwan Dereure; Christophe Kervazo; Johanne Seguin; Anikitos Garofalakis; Nathalie Mignet; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ISBI, 2024)

Semi-Supervised Segmentation with Topological Penalization for Quantifying Retinal Degeneration in Histological Sections. - Benjamin Dorra; Giacomo Nardi; Antoine Habis; Jean-Philippe Annereau; Jean-Christophe Olivo-Marin; Luis Briseño-Roa; Vannary Meas-Yedid (ISBI, 2024)

Particle Tracking in Biological Images with Optical-Flow Enhanced Kalman Filtering. - Raphael Reme; Alasdair Newson; Elsa D. Angelini; Jean-Christophe Olivo-Marin; Thibault Lagache (ISBI, 2024)

Motion Classification Based on Geometrical Features of Trajectories. - M. Santos Sano; A. Brelot; Jean-Christophe Olivo-Marin; Thibault Lagache; Giacomo Nardi (ISBI, 2024)

Scribble-based fast weak-supervision and interactive corrections for segmenting whole slide images. - Antoine Habis; Roy Rosman Nathanson; Vannary Meas-Yedid; Elsa D. Angelini; Jean-Christophe Olivo-Marin (CoRR, 2024)

Deep ContourFlow: Advancing Active Contours with Deep Learning. - Antoine Habis; Vannary Meas-Yedid; Elsa D. Angelini; Jean-Christophe Olivo-Marin (CoRR, 2024)

Neural-Network Model for Characterizing Stochastic Dynamic Variability of Cellular Particles. - M. Doggaz; A. Brelot; Jean-Christophe Olivo-Marin; Thibault Lagache; Giacomo Nardi (ISBI, 2025)

SINETRA: A Versatile Framework for Evaluating Single Neuron Tracking in Behaving Animals. - Raphael Reme; Alasdair Newson; Elsa D. Angelini; Jean-Christophe Olivo-Marin; Thibault Lagache (ISBI, 2025)

Estimation of Stiffness Maps in Deforming Cells Through Optical Flow With Bounded Curvature. - Yekta Kesenci; Aleix Boquet-Pujadas; Michael Unser; Jean-Christophe Olivo-Marin (IEEE Trans. Medical Imaging, 2025)

SAMJ: Fast Image Annotation on ImageJ/Fiji via Segment Anything Model. - Carlos Garcia-Lopez-de-Haro; Caterina Fuster-Barceló; Curtis T. Rueden; Jónathan Heras; Vladimír Ulman; Daniel Franco-Barranco; Adrián Inés; Kevin W. Eliceiri; Jean-Christophe Olivo-Marin; Jean-Yves Tinevez; Daniel Sage; Arrate Muñoz-Barrutia (CoRR, 2025)

Time-series analysis of cellular shapes using transported velocity fields. - Ximu Deng; Rituparna Sarkar; Elisabeth Labruyere; Jean-Christophe Olivo-Marin; Anuj Srivastava (Pattern Recognit., 2026)