BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations. - Anne Bahr; Julie Dawn Thompson; Jean-Claude Thierry; Olivier Poch (Nucleic Acids Res., 2001)

RASCAL: Rapid Scanning and Correction of Multiple Sequence Alignments. - Julie Dawn Thompson; Jean-Claude Thierry; Olivier Poch (Bioinform., 2003)

PipeAlign: a new toolkit for protein family analysis. - Frédéric Plewniak; Laurent Bianchetti; Yann Brelivet; Annaick Carles; Frédéric Chalmel; Odile Lecompte; Thiebaut Mochel; Luc Moulinier; Arnaud Muller; Jean Muller; Veronique Prigent; Raymond Ripp; et al. (Nucleic Acids Res., 2003)

DbW: automatic update of a functional family-specific multiple alignment. - Veronique Prigent; Jean-Claude Thierry; Olivier Poch; Frédéric Plewniak (Bioinform., 2005)