BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience. - Werner Van Geit; Michael Gevaert; Giuseppe Chindemi; Christian Rössert; Jean-Denis Courcol; Eilif B. Müller; Felix Schürmann; Idan Segev; Henry Markram (Frontiers Neuroinformatics, 2016)

The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow. - Rosanna Migliore; Carmen Alina Lupascu; Luca Leonardo Bologna; Armando Romani; Jean-Denis Courcol; Stefano Antonel; Werner Van Geit; Alex M. Thomson; Audrey Mercer; Sigrun Lange; Joanne Falck; Christian Rössert; et al. (PLoS Comput. Biol., 2018)

Interactive visualization and analysis of morphological skeletons of brain vasculature networks with VessMorphoVis. - Marwan Abdellah; Nadir Román Guerrero; Samuel Lapere; Jay S. Coggan; Daniel X. Keller; Benoit Coste; Snigdha Dagar; Jean-Denis Courcol; Henry Markram; Felix Schürmann (Bioinform., 2020)

The SONATA data format for efficient description of large-scale network models. - Kael Dai; Juan Hernando; Yazan N. Billeh; Sergey L. Gratiy; Judit Planas; Andrew P. Davison; Salvador Dura-Bernal; Padraig Gleeson; Adrien Devresse; Benjamin K. Dichter; Michael Gevaert; James Gonzalo King; et al. (PLoS Comput. Biol., 2020)

The EBRAINS Hodgkin-Huxley Neuron Builder: An online resource for building data-driven neuron models. - Luca Leonardo Bologna; Roberto Smiriglia; Carmen Alina Lupascu; Shailesh Appukuttan; Andrew P. Davison; Genrich Ivaska; Jean-Denis Courcol; Michele Migliore (Frontiers Neuroinformatics, 2022)

Synthesis of geometrically realistic and watertight neuronal ultrastructure manifolds for in silico modeling. - Marwan Abdellah; Alessandro Foni; Juan Jose Garcia-Cantero; Nadir Román Guerrero; Elvis Boci; Adrien Fleury; Jay S. Coggan; Daniel X. Keller; Judit Planas; Jean-Denis Courcol; Georges Khazen (Briefings Bioinform., 2024)