RNA velocity of single cells. - Gioele La Manno; Ruslan A. Soldatov; Amit Zeisel; Emelie Braun; Hannah Hochgerner; Viktor Petukhov; Katja Lidschreiber; Maria E. Kastriti; Peter Lönnerberg; Alessandro Furlan; Jean Fan; Lars E. Borm; et al. (Nat., 2018)

Multi Scale Diffeomorphic Metric Mapping of Spatial Transcriptomics Datasets. - Michael I. Miller; Jean Fan; Daniel Jacob Tward (CVPR Workshops, 2021)

VeloViz: RNA velocity-informed embeddings for visualizing cellular trajectories. - Lyla Atta; Arpan Sahoo; Jean Fan (Bioinform., 2022)

SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis. - Gohta Aihara; Kalen Clifton; Mayling Chen; Zhuoyan Li; Lyla Atta; Brendan F. Miller; Rahul Satija; John W. Hickey; Jean Fan (Bioinform., 2024)