Toward perfect reads. - Antoine Limasset; Jean-François Flot; Pierre Peterlongo (CoRR, 2017)

Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs. - Antoine Limasset; Jean-François Flot; Pierre Peterlongo (Bioinform., 2020)

Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms. - Nadège Guiglielmoni; Antoine Houtain; Alessandro Derzelle; Karine Van Doninck; Jean-François Flot (BMC Bioinform., 2021)

Haxe as a Swiss knife for bioinformatic applications: the SeqPHASE case story. - Yann Spöri; Jean-François Flot (Briefings Bioinform., 2024)