Normal Mode Analysis of Oligomeric Proteins: Reduction of the Memory Requirement by Consideration of Rigid Geomertry and Molecular Symmetry. - Jean-François Gibrat; Jean Garnier; Nobuhiro Go (J. Comput. Chem., 1994)

FROST: Revisited and Distributed. - Vincent Poirriez; Rumen Andonov; Antoine Marin; Jean-François Gibrat (IPDPS, 2005)

Choosing the Optimal Hidden Markov Model for Secondary-Structure Prediction. - Juliette Martin; Jean-François Gibrat; François Rodolphe (IEEE Intell. Syst., 2005)

ROC and confusion analysis of structure comparison methods identify the main causes of divergence from manual protein classification. - Vichetra Sam; Chin-Hsien Tai; Jean Garnier; Jean-François Gibrat; Byungkook Lee; Peter J. Munson (BMC Bioinform., 2006)

Recent Advances in Solving the Protein Threading Problem. - Rumen Andonov; Guillaume Collet; Jean-François Gibrat; Antoine Marin; Vincent Poirriez; Nicola Yanev (Grid Computing for Bioinformatics and Computational Biology, 2007)

Recent Advances in Solving the Protein Threading Problem - Rumen Andonov; Guillaume Collet; Jean-François Gibrat; Antoine Marin; Vincent Poirriez; Nicola Yanev (CoRR, 2007)

Mesures Hiérarchiques pondérées pour l'évaluation d'un système semi-automatique d'annotation de génomes utilisant des arbres de décision. - Lucie Gentils; Jérôme Azé; Claire Toffano-Nioche; Valentin Loux; Anne Poupon; Jean-François Gibrat; Christine Froidevaux (EGC, 2008)

Towards an automatic classification of protein structural domains based on structural similarity. - Vichetra Sam; Chin-Hsien Tai; Jean Garnier; Jean-François Gibrat; Byungkook Lee; Peter J. Munson (BMC Bioinform., 2008)

Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models? - Jean-François Taly; Antoine Marin; Jean-François Gibrat (BMC Bioinform., 2008)

Protein Threading. - Guillaume Collet; Rumen Andonov; Nicola Yanev; Jean-François Gibrat (CTW, 2009)

An Adaptive Combination of Matchers: Application to the Mapping of Biological Ontologies for Genome Annotation. - Bastien Rance; Jean-François Gibrat; Christine Froidevaux (DILS, 2009)

Amino acid "little Big Bang": Representing amino acid substitution matrices as dot products of Euclidian vectors. - Karel Zimmermann; Jean-François Gibrat (BMC Bioinform., 2010)

Local protein threading by Mixed Integer Programming. - Guillaume Collet; Rumen Andonov; Nicola Yanev; Jean-François Gibrat (Discret. Appl. Math., 2011)

DOMIRE: a web server for identifying structural domains and their neighbors in proteins. - Franck Samson; Richard Shrager; Chin-Hsien Tai; Vichetra Sam; Byungkook Lee; Peter J. Munson; Jean-François Gibrat; Jean Garnier (Bioinform., 2012)

Statistical Significance of Threading Scores. - Afshin Fayyaz Movaghar; Guillaume Launay; Sophie Schbath; Jean-François Gibrat; François Rodolphe (J. Comput. Biol., 2012)

Mapping Reads on a Genomic Sequence: An Algorithmic Overview and a Practical Comparative Analysis. - Sophie Schbath; Véronique Martin; Matthias Zytnicki; Julien Fayolle; Valentin Loux; Jean-François Gibrat (J. Comput. Biol., 2012)

Proposal for a European Public Health Research Infrastructure for Sharing of health and Medical administrative data (PHRIMA). - Anita Burgun; Dina V. Oksen; Wolfgang Kuchinke; Hans-Ulrich Prokosch; Thomas Ganslandt; Iain E. Buchan; Tjeerd Pieter van Staa; James A. Cunningham; Marianne L. Gjerstorff; Jean-Charles Dufour; Jean-François Gibrat; Macha Nikolski; et al. (MedInfo, 2015)

CYCLONE: A Multi-cloud Federation Platform for Complex Bioinformatics and Energy Applications (Short Paper). - Domenico Gallico; Matteo Biancani; Christophe Blanchet; Mohamed Bedri; Jean-François Gibrat; José-Ignacio Aznar-Baranda; Doris Hacker; Maria Kourkouli (CloudNet, 2016)

Représentation systémique multi-échelle des processus biologiques de la bactérie. - Vincent Henry; Arnaud Ferré; Christine Froidevaux; Anne Goelzer; Vincent Fromion; Sarah Cohen Boulakia; Sandra Dérozier; Marc Dinh; Ghislain Fiévet; Stephan Fischer 002; Jean-François Gibrat; Valentin Loux; et al. (IC, 2016)

An Economical Security Architecture for Multi-cloud Application Deployments in Federated Environments. - Mathias Slawik; Begüm Ilke Zilci; Axel Küpper; Yuri Demchenko; Fatih Turkmen; Christophe Blanchet; Jean-François Gibrat (GECON, 2016)

CYCLONE: A Platform for Data Intensive Scientific Applications in Heterogeneous Multi-cloud/Multi-provider Environment. - Yuri Demchenko; Christophe Blanchet; Charles Loomis; Robert Branchat; Mathias Slawik; Begüm Ilke Zilci; Mohamed Bedri; Jean-François Gibrat; Oleg Lodygensky; Miroslav Zivkovic; Cees de Laat (IC2E Workshops, 2016)

Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT. - Thomas Lacroix; Sylvie Thérond; Marc Rugeri; Pierre Nicolas; Annie Gendrault; Valentin Loux; Jean-François Gibrat (Bioinform., 2016)

An Error Correction Algorithm for NGS Data. - Mehdi Kchouk; Jean-François Gibrat; Mourad Elloumi (DEXA Workshops, 2017)

A short note on dynamic programming in a band. - Jean-François Gibrat (BMC Bioinform., 2018)