Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models? - Jean-François Taly; Antoine Marin; Jean-François Gibrat (BMC Bioinform., 2008)

STRIKE: evaluation of protein MSAs using a single 3D structure. - Carsten Kemena; Jean-François Taly; Jens Kleinjung; Cédric Notredame (Bioinform., 2011)

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension. - Paolo Di Tommaso; Sébastien Moretti; Ioannis Xenarios; Miquel Orobitg; Alberto Montanyola; Jia-Ming Chang; Jean-François Taly; Cédric Notredame (Nucleic Acids Res., 2011)

Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee. - Jia-Ming Chang; Paolo Di Tommaso; Jean-François Taly; Cédric Notredame (BMC Bioinform., 2012)

SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos. - Damjan Cicin-Sain; Antonio Hermoso Pulido; Anton Crombach; Karl R. Wotton; Eva Jiménez-Guri; Jean-François Taly; Guglielmo Roma; Johannes Jaeger (Nucleic Acids Res., 2015)