Automat: a novel software system for the systematic search for protein (or DNA) similarities with a notable application to autoimmune diseases and AIDS. - Hubert Cantalloube; Carole E. Nahum; A. Achour; T. Lehner; Isabelle Callebaut; Arsène Burny; B. Bizzini; Jean Paul Mornon; D. Zagury; Jean-François Zagury (Comput. Appl. Biosci., 1994)

RPBS: a web resource for structural bioinformatics. - C. Alland; François Moreews; D. Boens; Mathilde Carpentier; S. Chiusa; Mathieu Lonquety; N. Renault; Y. Wong; Hubert Cantalloube; Jacques Chomilier; Joëlle Hochez; Joël Pothier; et al. (Nucleic Acids Res., 2005)

ISHAPE: new rapid and accurate software for haplotyping. - Olivier Delaneau; Cédric Coulonges; Pierre-Yves Boëlle; George Nelson; Jean-Louis Spadoni; Jean-François Zagury (BMC Bioinform., 2007)

Shape-IT: new rapid and accurate algorithm for haplotype inference. - Olivier Delaneau; Cédric Coulonges; Jean-François Zagury (BMC Bioinform., 2008)

Comparative Evaluation of 3D Virtual Ligand Screening Methods: Impact of the Molecular Alignment on Enrichment. - David Giganti; Hélène Guillemain; Jean-Louis Spadoni; Michael Nilges; Jean-François Zagury; Matthieu Montès (J. Chem. Inf. Model., 2010)

Méthodes multiblocs pour l'identification de gènes associés au vieillissement cutané chez 502 femmes caucasiennes adultes. - Anne Bernard; Arthur Tenenhaus; Jean-François Zagury; Gilbert Saporta; Christiane Guinot (EGC, 2012)

Multiple Structures for Virtual Ligand Screening: Defining Binding Site Properties-Based Criteria to Optimize the Selection of the Query. - Nesrine Ben Nasr; Hélène Guillemain; Nathalie Lagarde; Jean-François Zagury; Matthieu Montès (J. Chem. Inf. Model., 2013)

Importance of the Pharmacological Profile of the Bound Ligand in Enrichment on Nuclear Receptors: Toward the Use of Experimentally Validated Decoy Ligands. - Nathalie Lagarde; Jean-François Zagury; Matthieu Montès (J. Chem. Inf. Model., 2014)

JASSA: a comprehensive tool for prediction of SUMOylation sites and SIMs. - Guillaume Beauclair; Antoine Bridier-Nahmias; Jean-François Zagury; Ali Saïb; Alessia Zamborlini (Bioinform., 2015)

Predictiveness curves in virtual screening. - Charly Empereur-mot; Hélène Guillemain; Aurélien Latouche; Jean-François Zagury; Vivian Viallon; Matthieu Montès (J. Cheminformatics, 2015)

Benchmarking Data Sets for the Evaluation of Virtual Ligand Screening Methods: Review and Perspectives. - Nathalie Lagarde; Jean-François Zagury; Matthieu Montès (J. Chem. Inf. Model., 2015)

Discriminating agonist and antagonist ligands of the nuclear receptors using 3D-pharmacophores. - Nathalie Lagarde; Solenne Delahaye; Jean-François Zagury; Matthieu Montès (J. Cheminformatics, 2016)

Screening Explorer-An Interactive Tool for the Analysis of Screening Results. - Charly Empereur-mot; Jean-François Zagury; Matthieu Montès (J. Chem. Inf. Model., 2016)

HLA-check: evaluating HLA data from SNP information. - Marc Jeanmougin; Josselin Noirel; Cédric Coulonges; Jean-François Zagury (BMC Bioinform., 2017)

Predicting the affinity of Farnesoid X Receptor ligands through a hierarchical ranking protocol: a D3R Grand Challenge 2 case study. - Manon Réau; Florent Langenfeld; Jean-François Zagury; Matthieu Montès (J. Comput. Aided Mol. Des., 2018)