Ontology application and use at the ENCODE DCC. - Venkat S. Malladi; Drew T. Erickson; Nikhil R. Podduturi; Laurence D. Rowe; Esther T. Chan; Jean M. Davidson; Benjamin C. Hitz; Marcus Ho; Brian T. Lee; Stuart R. Miyasato; Greg R. Roe; Matt Simison; et al. (Database J. Biol. Databases Curation, 2015)

Principles of metadata organization at the ENCODE data coordination center. - Eurie L. Hong; Cricket A. Sloan; Esther T. Chan; Jean M. Davidson; Venkat S. Malladi; J. Seth Strattan; Benjamin C. Hitz; Idan Gabdank; Aditi K. Narayanan; Marcus Ho; Brian T. Lee; Laurence D. Rowe; et al. (Database J. Biol. Databases Curation, 2016)

ENCODE data at the ENCODE portal. - Cricket A. Sloan; Esther T. Chan; Jean M. Davidson; Venkat S. Malladi; J. Seth Strattan; Benjamin C. Hitz; Idan Gabdank; Aditi K. Narayanan; Marcus Ho; Brian T. Lee; Laurence D. Rowe; Timothy R. Dreszer; et al. (Nucleic Acids Res., 2016)

Prevention of data duplication for high throughput sequencing repositories. - Idan Gabdank; Esther T. Chan; Jean M. Davidson; Jason A. Hilton; Carrie A. Davis; Ulugbek K. Baymuradov; Aditi K. Narayanan; Kathrina C. Onate; Keenan Graham; Stuart R. Miyasato; Timothy R. Dreszer; J. Seth Strattan; et al. (Database J. Biol. Databases Curation, 2018)

The Encyclopedia of DNA elements (ENCODE): data portal update. - Carrie A. Davis; Benjamin C. Hitz; Cricket A. Sloan; Esther T. Chan; Jean M. Davidson; Idan Gabdank; Jason A. Hilton; Kriti Jain; Ulugbek K. Baymuradov; Aditi K. Narayanan; Kathrina C. Onate; Keenan Graham; et al. (Nucleic Acids Res., 2018)

Reducing variability of breast cancer subtype predictors by grounding deep learning models in prior knowledge. - Paul E. Anderson 001; Richa Gadgil; William A. Johnson; Ella Schwab; Jean M. Davidson (Comput. Biol. Medicine, 2021)

refMLST: reference-based multilocus sequence typing enables universal bacterial typing. - Mondher Khdhiri; Ella Thomas; Chanel de Smet; Priyanka Chandar; Induja Chandrakumar; Jean M. Davidson; Paul Anderson; Samuel D. Chorlton (BMC Bioinform., 2024)