TE-Tracker: systematic identification of transposition events through whole-genome resequencing. - Arthur Gilly; Mathilde Etcheverry; Mohammed-Amin Madoui; Julie Guy; Leandro Quadrana; Adriana Alberti; Antoine Martin; Tony Heitkam; Stefan Engelen; Karine Labadie; Jeremie Le Pen; Patrick Wincker; et al. (BMC Bioinform., 2014)

MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data. - Mohammed-Amin Madoui; Carole Dossat; Léo d'Agata; Jan van Oeveren; Edwin van der Vossen; Jean-Marc Aury (BMC Bioinform., 2016)

Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data. - Leandro Lima; Camille Marchet; Ségolène Caboche; Corinne Da Silva; Benjamin Istace; Jean-Marc Aury; Hélène Touzet; Rayan Chikhi (Briefings Bioinform., 2020)

BoardION: real-time monitoring of Oxford Nanopore sequencing instruments. - Aimeric Bruno; Jean-Marc Aury; Stefan Engelen (BMC Bioinform., 2021)

Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes. - Laurence Garczarek; Ulysse Guyet; Hugo Doré; Gregory K. Farrant; Mark Hoebeke; Loraine Brillet-Guéguen; Antoine Bisch; Mathilde Ferrieux; Jukka Siltanen; Erwan Le Corre; Gildas Le Corguillé; Morgane Ratin; et al. (Nucleic Acids Res., 2021)