Relating transcription factors, modules of genes and cultivation conditions in Saccharomyces cerevisiae. - Theo A. Knijnenburg; Marcel J. T. Reinders; Jean-Marc Daran; Pascale A. S. Daran-Lapujade; Lodewyk F. A. Wessels (CSB Workshops, 2005)

Integrating genome assemblies with MAIA. - Jurgen F. Nijkamp; Wynand Winterbach; Marcel van den Broek; Jean-Marc Daran; Marcel J. T. Reinders; Dick de Ridder (Bioinform., 2010)

Degeneration of penicillin production in ethanol-limited chemostat cultivations of Penicillium chrysogenum: A systems biology approach. - Rutger D. Douma; Joana M. Batista; Kai M. Touw; Jan A. K. W. Kiel; Arjen M. Krikken; Zheng Zhao; Tânia Veiga; Paul Klaassen; Roel A. L. Bovenberg; Jean-Marc Daran; Joseph J. Heijnen; Walter M. van Gulik (BMC Syst. Biol., 2011)

Predicting Metabolic Fluxes Using Gene Expression Differences As Constraints. - Rogier J. P. van Berlo; Dick de Ridder; Jean-Marc Daran; Pascale A. S. Daran-Lapujade; Bas Teusink; Marcel J. T. Reinders (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

De novo detection of copy number variation by co-assembly. - Jurgen F. Nijkamp; Marcel van den Broek; Jan-Maarten A. Geertman; Marcel J. T. Reinders; Jean-Marc Daran; Dick de Ridder (Bioinform., 2012)

Membrane potential independent transport of NH3 in the absence of ammonium permeases in Saccharomyces cerevisiae. - Hugo F. Cueto-Rojas; Nicholas Milne; Ward van Helmond; Mervin M. Pieterse; Antonius J. A. van Maris; Jean-Marc Daran; Sebastian Aljoscha Wahl (BMC Syst. Biol., 2017)