Non-linear Soft Tissue Deformations for the Simulation of Percutaneous Surgeries. - Jean-Marc Schwartz; Ève Langelier; Christian Moisan; Denis Laurendeau (MICCAI, 2001)

Integrating Geometric and Biomechanical Models of a Liver Tumour for Cryosurgery Simulation. - Alexandra Branzan Albu; Jean-Marc Schwartz; Denis Laurendeau; Christian Moisan (IS4TH, 2003)

Virtual Environment and Sensori-Motor Activities: Haptic, Auditory and Olfactory Devices. - Marielle Mokhtari; François Bernier; François Lemieux; H. Martel; Jean-Marc Schwartz; Denis Laurendeau; Alexandra Branzan Albu (WSCG (Posters), 2004)

A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes. - Jean-Marc Schwartz; Minoru Kanehisa (ECCB/JBI, 2005)

Modelling liver tissue properties using a non-linear visco-elastic model for surgery simulation. - Jean-Marc Schwartz; Marc Denninger; Denis Rancourt; Christian Moisan; Denis Laurendeau (Medical Image Anal., 2005)

Identification of metabolic units induced by environmental signals. - Jose C. Nacher; Jean-Marc Schwartz; Minoru Kanehisa; Tatsuya Akutsu (ISMB (Supplement of Bioinformatics), 2006)

Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis. - Jean-Marc Schwartz; Minoru Kanehisa (BMC Bioinform., 2006)

Deterministic mathematical models of the cAMP pathway in Saccharomyces cerevisiae. - Thomas Williamson; Jean-Marc Schwartz; Douglas B. Kell; Lubomira Stateva (BMC Syst. Biol., 2009)

Streamlining the construction of large-scale dynamic models using generic kinetic equations. - Delali A. Adiamah; Julia Handl; Jean-Marc Schwartz (Bioinform., 2010)

Integration of metabolic databases for the reconstruction of genome-scale metabolic networks. - Karin Radrich; Yoshimasa Tsuruoka; Paul D. Dobson; Albert Gevorgyan; Neil Swainston; Gino Baart; Jean-Marc Schwartz (BMC Syst. Biol., 2010)

Exploring the genetic control of glycolytic oscillations in Saccharomyces Cerevisiae. - Thomas Williamson; Delali A. Adiamah; Jean-Marc Schwartz; Lubomira Stateva (BMC Syst. Biol., 2012)

Comprehensive Modelling of the Neurospora Circadian Clock and Its Temperature Compensation. - Yu-Yao Tseng; Suzanne M. Hunt; Christian Heintzen; Susan K. Crosthwaite; Jean-Marc Schwartz (PLoS Comput. Biol., 2012)

PathNER: a tool for systematic identification of biological pathway mentions in the literature. - Chengkun Wu; Jean-Marc Schwartz; Goran Nenadic (BMC Syst. Biol., 2013)

Applications of p53 interactome analysis to personalised drug discovery. - Michelle Hussain; Benjamin Stutchbury; Kun Tian; Rengül Çetin-Atalay; Jean-Marc Schwartz; Marija Krstic-Demonacos (IWBBIO, 2014)

In silico prediction of elementary mode fluxes. - Jean-Marc Schwartz; Peter Neal Taylor (IWBBIO, 2014)

A logical model of HIV-1 interactions with the T-cell activation signalling pathway. - Oyebode J. Oyeyemi; Oluwafemi Davies; David L. Robertson; Jean-Marc Schwartz (Bioinform., 2015)

PhenomeScape: a cytoscape app to identify differentially regulated sub-networks using known disease associations. - Jamie Soul; Sara L. Dunn; Tim E. Hardingham; Ray P. Boot-Handford; Jean-Marc Schwartz (Bioinform., 2016)

A MAPK-Driven Feedback Loop Suppresses Rac Activity to Promote RhoA-Driven Cancer Cell Invasion. - Joseph H. R. Hetmanski; Egor Zindy; Jean-Marc Schwartz; Patrick T. Caswell (PLoS Comput. Biol., 2016)

Cyclic decomposition explains a photosynthetic down regulation for Chlamydomonas reinhardtii. - Stephen P. Chapman; Marcelo Trindade dos Santos; Giles N. Johnson; Maurício Vieira Kritz; Jean-Marc Schwartz (Biosyst., 2017)

Insight into glucocorticoid receptor signalling through interactome model analysis. - Emyr Bakker; Kun Tian; Luciano Mutti; Constantinos Demonacos; Jean-Marc Schwartz; Marija Krstic-Demonacos (PLoS Comput. Biol., 2017)

A meta-analysis portal for human breast cancer transcriptomics data: BreastCancerVis. - Petronela Buiga; Jamie Soul; Jean-Marc Schwartz (BIBM, 2018)

Using set theory to reduce redundancy in pathway sets. - Ruth Alexandra Stoney; Jean-Marc Schwartz; David L. Robertson; Goran Nenadic (BMC Bioinform., 2018)

Regulation of dual specificity phosphatases in breast cancer during initial treatment with Herceptin: a Boolean model analysis. - Petronela Buiga; Ari Elson; Lydia Tabernero; Jean-Marc Schwartz (BMC Syst. Biol., 2018)

SkeletalVis: an exploration and meta-analysis data portal of cross-species skeletal transcriptomics data. - Jamie Soul; Tim E. Hardingham; Ray P. Boot-Handford; Jean-Marc Schwartz (Bioinform., 2019)

Modelling the role of dual specificity phosphatases in herceptin resistant breast cancer cell lines. - Petronela Buiga; Ari Elson; Lydia Tabernero; Jean-Marc Schwartz (Comput. Biol. Chem., 2019)

Metabolic Models. - Jean-Marc Schwartz; Zita Soons (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

Combinatorial mathematical modelling approaches to interrogate rear retraction dynamics in 3D cell migration. - Joseph H. R. Hetmanski; Matthew C. Jones; Fatima Chunara; Jean-Marc Schwartz; Patrick T. Caswell (PLoS Comput. Biol., 2021)

SubcellulaRVis: a web-based tool to simplify and visualise subcellular compartment enrichment. - Joanne Watson; Michael Smith; Chiara Francavilla; Jean-Marc Schwartz (Nucleic Acids Res., 2022)

HIHISIV: a database of gene expression in HIV and SIV host immune response. - Raquel Lopes Costa; Luiz M. R. Gadelha Jr.; Mirela D'arc; Marcelo Ribeiro-Alves; David L. Robertson; Jean-Marc Schwartz; Marcelo A. Soares; Fábio Porto 001 (BMC Bioinform., 2024)