A common philosophy and FORTRAN 77 software package for implementing and searching sequence databases. - Jean-Michel Claverie (Nucleic Acids Res., 1984)

Assessing the biological significance of primary structure consensus patterns using sequence databanks. I. Heat-shock and glucocorticoid control elements in eukaryotic promoters. - Jean-Michel Claverie; I. Sauvaget (Comput. Appl. Biosci., 1985)

Heuristic informational analysis of sequences. - Jean-Michel Claverie; L. Bougueleret (Nucleic Acids Res., 1986)

Smoothing profiles with sliding windows: better to wear a hat!. - Jean-Michel Claverie; C. Daulmerie (Comput. Appl. Biosci., 1991)

Sequence "Signals": Artifact or Reality?. - Jean-Michel Claverie (Comput. Chem., 1992)

Information Enhancement Methods for Large Scale Sequence Analysis. - Jean-Michel Claverie; David J. States (Comput. Chem., 1993)

Some Useful Statistical Properties of Position-weight Matrices. - Jean-Michel Claverie (Comput. Chem., 1994)

The statistical significance of nucleotide position-weight matrix matches. - Jean-Michel Claverie; Stéphane Audic (Comput. Appl. Biosci., 1996)

Detection of Eukaryotic Promoters Using Markov Transition Matrices. - Stéphane Audic; Jean-Michel Claverie (Comput. Chem., 1997)

The Difficulty of Identifying Genes in Anonymous Vertebrate Sequences. - Jean-Michel Claverie; Olivier Poirot; Fabrice Lopez (Comput. Chem., 1997)

Comparative analysis of the Arabidopsis and rice Expressed Sequence Tag (EST) sets. - Rob M. Ewing; Olivier Poirot; Jean-Michel Claverie (Silico Biol., 1999)

Robust nonlinear control design using competitive coevolution. - Jean-Michel Claverie; Kenneth A. De Jong; Alaa F. Sheta (CEC, 2000)

The Detection of Putative Recombinant Sequences Using BLAST. - Alia BenKahla; David L. Robertson; Emmanuel Beaudoing; Jean-Michel Claverie (German Conference on Bioinformatics, 2000)

Analysis of Phylogenetic Profiles Using Bayesian Decomposition. - Ghislain Bidaut; Karsten Suhre; Jean-Michel Claverie; Michael F. Ochs (CSB, 2003)

Microbial Functional Genomics: Pulling Together a Variety of Approaches and Concepts. - Jean-Michel Claverie (CSB, 2003)

Annotation of bacterial genomes using improved phylogenomic profiles. - François Enault; Karsten Suhre; Chantal Abergel; Olivier Poirot; Jean-Michel Claverie (ISMB (Supplement of Bioinformatics), 2003)

Phydbac (phylogenomic display of bacterial genes): an interactive resource for the annotation of bacterial genomes. - François Enault; Karsten Suhre; Olivier Poirot; Chantal Abergel; Jean-Michel Claverie (Nucleic Acids Res., 2003)

CaspR: a web server for automated molecular replacement using homology modelling. - Jean-Baptiste Claude; Karsten Suhre; Cédric Notredame; Jean-Michel Claverie; Chantal Abergel (Nucleic Acids Res., 2004)

Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis. - François Enault; Karsten Suhre; Olivier Poirot; Chantal Abergel; Jean-Michel Claverie (Nucleic Acids Res., 2004)

FusionDB: a database for in-depth analysis of prokaryotic gene fusion events. - Karsten Suhre; Jean-Michel Claverie (Nucleic Acids Res., 2004)

Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis. - François Enault; Karsten Suhre; Jean-Michel Claverie (BMC Bioinform., 2005)

Metagrowth: a new resource for the building of metabolic hypotheses in microbiology. - Hiroyuki Ogata; Jean-Michel Claverie (Nucleic Acids Res., 2005)

Determination of strongly overlapping signaling activity from microarray data. - Ghislain Bidaut; Karsten Suhre; Jean-Michel Claverie; Michael F. Ochs (BMC Bioinform., 2006)

Phylogeny.fr: robust phylogenetic analysis for the non-specialist. - Alexis Dereeper; Valentin Guignon; Guillaume Blanc; Stéphane Audic; S. Buffet; François Chevenet; Jean-François Dufayard; Stéphane Guindon; Vincent Lefort; Magali Lescot; Jean-Michel Claverie; Olivier Gascuel (Nucleic Acids Res., 2008)

ACDtool: a web-server for the generic analysis of large data sets of counts. - Jean-Michel Claverie; Thi Ngan Ta (Bioinform., 2019)