Freely Available Conformer Generation Methods: How Good Are They? - Jean-Paul Ebejer; Garrett M. Morris; Charlotte M. Deane (J. Chem. Inf. Model., 2012)

Memoir: template-based structure prediction for membrane proteins. - Jean-Paul Ebejer; Jamie R. Hill; Sebastian Kelm; Jiye Shi; Charlotte M. Deane (Nucleic Acids Res., 2013)

Crowdsourcing Yields a New Standard for Kinks in Protein Helices. - Henry R. Wilman; Jean-Paul Ebejer; Jiye Shi; Charlotte M. Deane; Bernhard Knapp (J. Chem. Inf. Model., 2014)

Are the physicochemical properties of antibacterial compounds really different from other drugs? - Jean-Paul Ebejer; Michael H. Charlton; Paul W. Finn (J. Cheminformatics, 2016)

Engineering Adaptive User Interfaces Using Monitoring-Oriented Programming. - Aaron John Buhagiar; Gordon J. Pace; Jean-Paul Ebejer (QRS, 2017)

Runtime Verification using VALOUR. - Shaun Azzopardi; Christian Colombo 001; Jean-Paul Ebejer; Edward Mallia; Gordon J. Pace (RV-CuBES, 2017)

Ligity: A Non-Superpositional, Knowledge-Based Approach to Virtual Screening. - Jean-Paul Ebejer; Paul W. Finn; Wing Ki Wong; Charlotte M. Deane; Garrett M. Morris (J. Chem. Inf. Model., 2019)

LigityScore: Convolutional Neural Network for Binding-affinity Predictions. - Joseph Azzopardi; Jean-Paul Ebejer (BIOINFORMATICS, 2021)

LigityScore: A CNN-Based Method for Binding Affinity Predictions. - Joseph Azzopardi; Jean-Paul Ebejer (BIOSTEC (Selected Papers), 2021)

Few-Shot Learning for Low-Data Drug Discovery. - Daniel Vella; Jean-Paul Ebejer (J. Chem. Inf. Model., 2023)