Dissection moléculaire du site de fixation de l'antigène d'une molécule d'histocompatibilité de classe II et modélisation stochastique des interactions macromoléculaires au sein de la cellule vivante. (Molecular dissection of the antigen binding site of a major histocompatibility complex class II molecule and stochastic modelling of macromolecular interactions in the living cell). - Jean Peccoud (1991)

Analysis of the Stabilizing Effect of ROM on the Genetic Network Controlling ColE1 Plasmid Replication. - P. J. E. Goss; Jean Peccoud (Pacific Symposium on Biocomputing, 1999)

Modeling networks of molecular interactions in the living cell: structure, dynamics, and applications. - Kent Vander Velden; Jean Peccoud (PNPM, 2003)

Parameterization of a Nonlinear Genotype to Phenotype Map Using Molecular Networks. - Jean Peccoud; Kent Vander Velden (Pacific Symposium on Biocomputing, 2005)

Dynamic partitioning for hybrid simulation of the bistable HIV-1 transactivation network. - Mark Griffith; Tod Courtney; Jean Peccoud; William H. Sanders (Bioinform., 2006)

A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts. - Yizhi Cai; Brian Hartnett; Claes Gustafsson; Jean Peccoud (Bioinform., 2007)

Möbius: an integrated discrete-event modeling environment. - Jean Peccoud; Tod Courtney; William H. Sanders (Bioinform., 2007)

Writing DNA with GenoCADTM. - Michael J. Czar; Yizhi Cai; Jean Peccoud (Nucleic Acids Res., 2009)

Modeling Structure-Function Relationships in Synthetic DNA Sequences using Attribute Grammars. - Yizhi Cai; Matthew W. Lux; Laura Adam; Jean Peccoud (PLoS Comput. Biol., 2009)

Co-Design in Synthetic Biology: A System-Level Analysis of the Development of an Environmental Sensing Device. - David A. Ball; Matthew W. Lux; Russell R. Graef; Matthew W. Peterson; Jane D. Valenti; John Dileo; Jean Peccoud (Pacific Symposium on Biocomputing, 2010)

Development of a domain-specific genetic language to design Chlamydomonas reinhardtii expression vectors. - Mandy L. Wilson; Sakiko Okumoto; Laura Adam; Jean Peccoud (Bioinform., 2014)

If You Can't Measure It, You Can't Manage It. - Jean Peccoud (PLoS Comput. Biol., 2014)

A Stochastic Model of the Yeast Cell Cycle Reveals Roles for Feedback Regulation in Limiting Cellular Variability. - Debashis Barik; David A. Ball; Jean Peccoud; John J. Tyson (PLoS Comput. Biol., 2016)

GraphSpace: stimulating interdisciplinary collaborations in network biology. - Aditya Bharadwaj; Divit P. Singh; Anna M. Ritz; Allison N. Tegge; Christopher L. Poirel; Pavel K. Brazhnik; Neil Adames; Kurt Luther; Shiv D. Kale; Jean Peccoud; John J. Tyson; T. M. Murali 001 (Bioinform., 2017)

CrossPlan: Systematic Planning of Genetic Crosses to Validate Mathematical Models. - Aditya Pratapa; Neil Adames; Pavel K. Kraikivski; Nicholas Franzese; John J. Tyson; Jean Peccoud; T. M. Murali 001 (BCB, 2018)

Digital Signatures to Ensure the Authenticity and Integrity of Synthetic DNA Molecules. - Diptendu Mohan Kar; Indrajit Ray; Jenna Gallegos; Jean Peccoud (NSPW, 2018)

CrossPlan: systematic planning of genetic crosses to validate mathematical models. - Aditya Pratapa; Neil Adames; Pavel K. Brazhnik; Nicholas Franzese; John J. Tyson; Jean Peccoud; T. M. Murali 001 (Bioinform., 2018)

Synthesizing DNA molecules with identity-based digital signatures to prevent malicious tampering and enabling source attribution. - Diptendu Mohan Kar; Indrajit Ray; Jenna Gallegos; Jean Peccoud; Indrakshi Ray (J. Comput. Secur., 2020)

Introduction to the Special Issue on BioFoundries and Cloud Laboratories. - Douglas Densmore; Nathan J. Hillson; Eric Klavins; Chris J. Myers; Jean Peccoud; Giovanni Stracquadanio (ACM J. Emerg. Technol. Comput. Syst., 2023)

Ten simple rules for managing laboratory information. - Casey-Tyler Berezin; Luis U. Aguilera; Sonja Billerbeck; Philip E. Bourne; Douglas Densmore; Paul S. Freemont; Thomas E. Gorochowski; Sarah I. Hernandez; Nathan J. Hillson; Connor R. King; Michael Köpke; Shuyi Ma; et al. (PLoS Comput. Biol., 2023)

Stochastic model of vesicular stomatitis virus replication reveals mutational effects on virion production. - Connor R. King; Casey-Tyler Berezin; Jean Peccoud (PLoS Comput. Biol., 2024)