MUBII-TB-DB: a database of mutations associated with antibiotic resistance in Mycobacterium tuberculosis. - Jean-Pierre Flandrois; Gérard Lina; Oana Dumitrescu (BMC Bioinform., 2014)

leBIBI QBPP : a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences. - Jean-Pierre Flandrois; Guy Perrière; Manolo Gouy (BMC Bioinform., 2015)

Multi-proteins similarity-based sampling to select representative genomes from large databases. - Rémi-Vinh Coudert; Jean-Philippe Charrier; Frédéric Jauffrit; Jean-Pierre Flandrois; Céline Brochier-Armanet (BMC Bioinform., 2025)