Jean Y. H. Yang

Orcid: 0000-0002-5271-2603

Affiliations:
  • University of Sydney, Charles Perkins Centre, NSW, Australia


According to our database1, Jean Y. H. Yang authored at least 44 papers between 2001 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
Benchmarking of analytical combinations for COVID-19 outcome prediction using single-cell RNA sequencing data.
Briefings Bioinform., May, 2023

Deep multimodal graph-based network for survival prediction from highly multiplexed images and patient variables.
Comput. Biol. Medicine, March, 2023

scSTAR reveals hidden heterogeneity with a real-virtual cell pair structure across conditions in single-cell RNA sequencing data.
Briefings Bioinform., March, 2023

2022
Scalable workflow for characterization of cell-cell communication in COVID-19 patients.
PLoS Comput. Biol., October, 2022

scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction.
Bioinform., October, 2022

Cross-Platform Omics Prediction procedure: a statistical machine learning framework for wider implementation of precision medicine.
npj Digit. Medicine, 2022

The health digital twin to tackle cardiovascular disease - a review of an emerging interdisciplinary field.
npj Digit. Medicine, 2022

2021
Uncovering cell identity through differential stability with Cepo.
Nat. Comput. Sci., 2021

A field guide to cultivating computational biology.
CoRR, 2021

2020
Ensemble deep learning in bioinformatics.
Nat. Mach. Intell., 2020

LC-N2G: a local consistency approach for nutrigenomics data analysis.
BMC Bioinform., 2020

CiteFuse enables multi-modal analysis of CITE-seq data.
Bioinform., 2020

2019
Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis.
BMC Bioinform., December, 2019

AdaSampling for Positive-Unlabeled and Label Noise Learning With Bioinformatics Applications.
IEEE Trans. Cybern., 2019

An Uncertainty Visual Analytics Framework for fMRI Functional Connectivity.
Neuroinformatics, 2019

scDC: single cell differential composition analysis.
BMC Bioinform., 2019

bcGST - an interactive bias-correction method to identify over-represented gene-sets in boutique arrays.
Bioinform., 2019

DCARS: differential correlation across ranked samples.
Bioinform., 2019

Impact of similarity metrics on single-cell RNA-seq data clustering.
Briefings Bioinform., 2019

Challenges for Brain Data Analysis in VR Environments.
Proceedings of the IEEE Pacific Visualization Symposium, 2019

2018
Diagonal Discriminant Analysis with Feature Selection for High Dimensional Data.
CoRR, 2018

2017
Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells.
Bioinform., 2017

Positive unlabeled learning via wrapper-based adaptive sampling.
Proceedings of the Twenty-Sixth International Joint Conference on Artificial Intelligence, 2017

2016
Characterizing mutation-expression network relationships in multiple cancers.
Comput. Biol. Chem., 2016

Integrated single cell data analysis reveals cell specific networks and novel coactivation markers.
BMC Syst. Biol., 2016

Positive-unlabeled ensemble learning for kinase substrate prediction from dynamic phosphoproteomics data.
Bioinform., 2016

2015
Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data.
PLoS Comput. Biol., 2015

ClassifyR: an R package for performance assessment of classification with applications to transcriptomics.
Bioinform., 2015

Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data.
Bioinform., 2015

2014
Network-based biomarkers enhance classical approaches to prognostic gene expression signatures.
BMC Syst. Biol., 2014

Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway.
Bioinform., 2014

2013
Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information.
BMC Genom., 2013

Estimation of data-specific constitutive exons with RNA-Seq data.
BMC Bioinform., 2013

Latin square dataset for evaluating the accuracy of mass spectrometry-based protein identification and quantification.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
Improving X!Tandem on Peptide Identification from Mass Spectrometry by Self-Boosted Percolator.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012

OCAP: an open comprehensive analysis pipeline for iTRAQ.
Bioinform., 2012

2011
Two-Step Cross-Entropy Feature Selection for Microarrays - Power Through Complementarity.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Gene-gene interaction filtering with ensemble of filters.
BMC Bioinform., 2011

2010
Comparison study of microarray meta-analysis methods.
BMC Bioinform., 2010

A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data.
Bioinform., 2010

2007
A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.
Bioinform., 2007

2005
Analysis of a Splice Array Experiment Elucidates Roles of Chromatin Elongation Factor Spt4-5 in Splicing.
PLoS Comput. Biol., 2005

Identifying differentially expressed genes from microarray experiments via statistic synthesis.
Bioinform., 2005

2001
Analysis of CDNA Microarray Images.
Briefings Bioinform., 2001


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