Automated cell tracking using StarDist and TrackMate. - Elnaz Fazeli; Nathan H. Roy; Gautier Follain; Romain F. Laine; Lucas von Chamier; Pekka E. Hänninen; John E. Eriksson; Jean-Yves Tinevez; Guillaume Jacquemet (F1000Research, 2020)

manvr3d: A Platform for Human-in-the-loop Cell Tracking in Virtual Reality. - Samuel Pantze; Jean-Yves Tinevez; Matthew McGinity; Ulrik Günther (CoRR, 2025)

SAMJ: Fast Image Annotation on ImageJ/Fiji via Segment Anything Model. - Carlos Garcia-Lopez-de-Haro; Caterina Fuster-Barceló; Curtis T. Rueden; Jónathan Heras; Vladimír Ulman; Daniel Franco-Barranco; Adrián Inés; Kevin W. Eliceiri; Jean-Christophe Olivo-Marin; Jean-Yves Tinevez; Daniel Sage; Arrate Muñoz-Barrutia (CoRR, 2025)