A non-parametric approach to translating gene region heterogeneity associated with phenotype into location heterogeneity. - Jeanne Kowalski (Bioinform., 2001)

Non-parametric, hypothesis-based analysis of microarrays for comparison of several phenotypes. - Jeanne Kowalski; Charles G. Drake; Ronald H. Schwartz; Jonathan Powell (Bioinform., 2004)

From ambiguities to insights in cancer diagnosis via query-based comparisons. - Jeanne Kowalski; Conover Talbot Jr.; Hua L. Tsai; Nijaguna Prasad; Christopher Umbricht; Martha A. Zeiger (Pattern Recognit., 2009)

CASAS: Cancer Survival Analysis Suite, a web based application. - Manali Rupji; Xinyan Zhang; Jeanne Kowalski (F1000Research, 2017)

GAC: Gene Associations with Clinical, a web based application. - Xinyan Zhang; Manali Rupji; Jeanne Kowalski (F1000Research, 2017)

shinySISPA: A web tool for defining sample groups using gene sets from multiple-omics data. - Bhakti Dwivedi; Jeanne Kowalski (F1000Research, 2018)

Carrying out streamlined routine data analyses with reports for observational studies: introduction to a series of generic SAS® macros. - Yuan Liu; Dana C. Nickleach; Chao Zhang; Jeffrey M. Switchenko; Jeanne Kowalski (F1000Research, 2018)

kmlabdms/myCMIE: myCMIE 0.1.0. - Qi Xu; Jeanne Kowalski (Zenodo, 2023)

NBBC: a non-B DNA burden explorer in cancer. - Qi Xu; Jeanne Kowalski (Nucleic Acids Res., 2023)

MoCoLo: a testing framework for motif co-localization. - Qi Xu; Imee M. A del Mundo; Maha Zewail-Foote; Brian T. Luke; Karen M. Vasquez; Jeanne Kowalski (Briefings Bioinform., 2024)