Multiple instance ranking. - Charles Bergeron; Jed Zaretzki; Curt M. Breneman; Kristin P. Bennett (ICML, 2008)

RS-Predictor: A New Tool for Predicting Sites of Cytochrome P450-Mediated Metabolism Applied to CYP 3A4. - Jed Zaretzki; Charles Bergeron; Patrik Rydberg; Tao-wei Huang; Kristin P. Bennett; Curt M. Breneman (J. Chem. Inf. Model., 2011)

RS-Predictor Models Augmented with SMARTCyp Reactivities: Robust Metabolic Regioselectivity Predictions for Nine CYP Isozymes. - Jed Zaretzki; Patrik Rydberg; Charles Bergeron; Kristin P. Bennett; Lars Olsen; Curt M. Breneman (J. Chem. Inf. Model., 2012)

Fast Bundle Algorithm for Multiple-Instance Learning. - Charles Bergeron; Gregory M. Moore; Jed Zaretzki; Curt M. Breneman; Kristin P. Bennett (IEEE Trans. Pattern Anal. Mach. Intell., 2012)

Scaffold network generator: a tool for mining molecular structures. - Matthew K. Matlock; Jed Zaretzki; S. Joshua Swamidass (Bioinform., 2013)

RS-WebPredictor: a server for predicting CYP-mediated sites of metabolism on drug-like molecules. - Jed Zaretzki; Charles Bergeron; Tao-wei Huang; Patrik Rydberg; S. Joshua Swamidass; Curt M. Breneman (Bioinform., 2013)

DR-Predictor: Incorporating Flexible Docking with Specialized Electronic Reactivity and Machine Learning Techniques to Predict CYP-Mediated Sites of Metabolism. - Tao-wei Huang; Jed Zaretzki; Charles Bergeron; Kristin P. Bennett; Curt M. Breneman (J. Chem. Inf. Model., 2013)

XenoSite: Accurately Predicting CYP-Mediated Sites of Metabolism with Neural Networks. - Jed Zaretzki; Matthew K. Matlock; S. Joshua Swamidass (J. Chem. Inf. Model., 2013)

Extending P450 site-of-metabolism models with region-resolution data. - Jed M. Zaretzki; Michael R. Browning; Tyler B. Hughes; S. Joshua Swamidass (Bioinform., 2015)

Improved Prediction of CYP-Mediated Metabolism with Chemical Fingerprints. - Jed Zaretzki; Kevin Michael Boehm; Sanjay Joshua Swamidass (J. Chem. Inf. Model., 2015)