Biomolecular Invariants of Amino Acid Trees. - Debra J. Knisley; Jeff Knisley; Leonard Roberts (BCBGC, 2008)

Network Properties of (t, r)-regular graphs for small t. - Debra J. Knisley; Jeff Knisley; Duran Williams (TMFCS, 2008)

A predictive model for secondary RNA structure using graph theory and a neural network. - Denise R. Koessler; Debra J. Knisley; Jeff Knisley; Teresa W. Haynes (BMC Bioinform., 2010)

Predicting protein-protein interactions using graph invariants and a neural network. - Debra J. Knisley; Jeff Knisley (Comput. Biol. Chem., 2011)