ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval. - Jeff Reneker; Chi-Ren Shyu; Peiyu Zeng; Joseph C. Polacco; Walter Gassmann (Nucleic Acids Res., 2004)

Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals. - Jeff Reneker; Chi-Ren Shyu (BMC Bioinform., 2005)

Applying Sequential Forward Floating Selection to Protein Structure Prediction with a Study of HIV-1 RP. - Jeff Reneker; Chi-Ren Shyu (AMIA, 2006)