Error control variability in pathway-based microarray analysis. - David L. Gold; Jeffrey C. Miecznikowski; Song Liu (Bioinform., 2009)

Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset. - Qianqian Zhu; Jeffrey C. Miecznikowski; Marc S. Halfon (BMC Bioinform., 2010)

Bootstrap MISE Estimators to Obtain Bandwidth for Kernel Density Estimation. - Jeffrey C. Miecznikowski; Dongliang Wang; Alan David Hutson (Commun. Stat. Simul. Comput., 2010)

Feature Detection Techniques for Preprocessing Proteomic Data. - Kimberly F. Sellers; Jeffrey C. Miecznikowski (Int. J. Biomed. Imaging, 2010)

iGenomicViewer: R package for visualisation of high dimension genomic data. - Daniel P. Gaile; Lori A. Shepherd; Andrew E. Bruno; Song Liu; Carl D. Morrison; Lara E. Sucheston; Jeffrey C. Miecznikowski (Int. J. Bioinform. Res. Appl., 2010)

A wholly defined Agilent microarray spike-in dataset. - Qianqian Zhu; Jeffrey C. Miecznikowski; Marc S. Halfon (Bioinform., 2011)

Comparing Imputation Procedures for Affymetrix Gene Expression Datasets Using MAQC Datasets. - Sreevidya Sadananda Sadasiva Rao; Lori A. Shepherd; Andrew E. Bruno; Song Liu; Jeffrey C. Miecznikowski (Adv. Bioinformatics, 2013)

FUSIM: a software tool for simulating fusion transcripts. - Andrew E. Bruno; Jeffrey C. Miecznikowski; Maochun Qin; Jianmin Wang 014; Song Liu (BMC Bioinform., 2013)

Gene set analysis controlling for length bias in RNA-seq experiments. - Xing Ren; Qiang Hu; Song Liu; Jianmin Wang 014; Jeffrey C. Miecznikowski (BioData Min., 2017)

testforDEP: An R Package for Modern Distribution-free Tests and Visualization Tools for Independence. - Jeffrey C. Miecznikowski; En-shuo Hsu; Yanhua Chen; Albert Vexler (R J., 2018)

Gene-set integrative analysis of multi-omics data using tensor-based association test. - Sheng-Mao Chang; Meng Yang; Wenbin Lu; Yu-Jyun Huang; Yueyang Huang; Hung Hung; Jeffrey C. Miecznikowski; Tzu-Pin Lu; Jung-Ying Tzeng (Bioinform., 2021)

Exceedance control of the false discovery proportion via high precision inversion method of Berk-Jones statistics. - Jeffrey C. Miecznikowski; Jiefei Wang (Comput. Stat. Data Anal., 2023)