Detection of fungal spores in 3D microscopy images of macroscopic areas of host tissue. - Abhishek Kolagunda; Randall Wisser; Timothy Chaya; Jeffrey Caplan; Chandra Kambhamettu (BIBM, 2016)

DeepXScope: Segmenting Microscopy Images with a Deep Neural Network. - Philip Saponaro; Wayne Treible; Abhishek Kolagunda; Timothy Chaya; Jeffrey Caplan; Chandra Kambhamettu; Randall Wisser (CVPR Workshops, 2017)

Stromule branch tip detection based on accurate cell image segmentation. - Guoyu Lu; Li Ren; Jeffrey Caplan; Chandra Kambhamettu (ICIP, 2017)

Three-dimensional segmentation of vesicular networks of fungal hyphae in macroscopic microscopy image stacks. - Philip Saponaro; Wayne Treible; Abhishek Kolagunda; Stephen Rhein; Jeffrey Caplan; Chandra Kambhamettu; Randall Wisser (ICIP, 2017)

Densely Connected Stacked U-network for Filament Segmentation in Microscopy Images. - Yi Liu; Wayne Treible; Abhishek Kolagunda; Alex Nedo; Philip Saponaro; Jeffrey Caplan; Chandra Kambhamettu (ECCV Workshops (6), 2018)

Intersection to Overpass: Instance Segmentation on Filamentous Structures With an Orientation-Aware Neural Network and Terminus Pairing Algorithm. - Yi Liu; Abhishek Kolagunda; Wayne Treible; Alex Nedo; Jeffrey Caplan; Chandra Kambhamettu (CVPR Workshops, 2019)

Quantifying Actin Filaments in Microscopic Images using Keypoint Detection Techniques and A Fast Marching Algorithm. - Yi Liu; Alexander Nedo; Kody Seward; Jeffrey Caplan; Chandra Kambhamettu (ICIP, 2020)

Extraction and Quantification of Actin Cytoskeleton in Microscopic Images Using a Deep Learning Based Framework and a Curve Clustering Model. - Yi Liu; Jeffrey Caplan; Chandra Kambhamettu (ICPR, 2022)

Pick and Trace: Instance Segmentation for Filamentous Objects with a Recurrent Neural Network. - Yi Liu; Su Peng; Jeffrey Caplan; Chandra Kambhamettu (MICCAI (8), 2023)