Expression profiling of microRNAs by deep sequencing. - Chad Creighton; Jeffrey G. Reid; Preethi H. Gunaratne (Briefings Bioinform., 2009)

PBHoney: Identifying Genomic Variants via Long-Read Discordance and Interrupted Mapping. - Adam C. English; William J. Salerno; Jeffrey G. Reid (BMC Bioinform., 2014)

Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline. - Jeffrey G. Reid; Andrew Carroll; Narayanan Veeraraghavan; Mahmoud Dahdouli; Andreas Sundquist; Adam C. English; Matthew N. Bainbridge; Simon White; William J. Salerno; Christian Buhay; Fuli Yu; Donna M. Muzny; et al. (BMC Bioinform., 2014)

CLAMMS: a scalable algorithm for calling common and rare copy number variants from exome sequencing data. - Jonathan S. Packer; Evan K. Maxwell; Colm O'Dushlaine; Alexander E. Lopez; Frederick E. Dewey; Rostislav Chernomorsky; Aris Baras; John D. Overton; Lukas Habegger; Jeffrey G. Reid (Bioinform., 2016)

Identifying Genetic Associations with Variability in Metabolic Health and Blood Count Laboratory Values: Diving into the Quantitative Traits by Leveraging Longitudinal Data from an EHR. - Shefali S. Verma; Anastasia Lucas; Daniel R. Lavage; Joseph B. Leader; Raghu Metpally; Sarathbabu Krishnamurthy; Frederick E. Dewey; Ingrid B. Borecki; Alexander E. Lopez; John D. Overton; John Penn; Jeffrey G. Reid; et al. (PSB, 2017)

Sparse Project VCF: efficient encoding of population genotype matrices. - Michael F. Lin; Xiaodong Bai; William J. Salerno; Jeffrey G. Reid (Bioinform., 2021)