SMOG@ctbp: simplified deployment of structure-based models in GROMACS. - Jeffrey K. Noel; Paul C. Whitford; Karissa Y. Sanbonmatsu; José N. Onuchic (Nucleic Acids Res., 2010)

The Dominant Folding Route Minimizes Backbone Distortion in SH3. - Heiko Lammert; Jeffrey K. Noel; José N. Onuchic (PLoS Comput. Biol., 2012)

Pierced Lasso Bundles Are a New Class of Knot-like Motifs. - Ellinor Haglund; Joanna I. Sulkowska; Jeffrey K. Noel; Heiko Lammert; José N. Onuchic; Patricia A. Jennings (PLoS Comput. Biol., 2014)

Interdomain Contacts Control Native State Switching of RfaH on a Dual-Funneled Landscape. - César A. Ramírez-Sarmiento; Jeffrey K. Noel; Sandro L. Valenzuela; Irina Artsimovitch (PLoS Comput. Biol., 2015)

SMOG 2: A Versatile Software Package for Generating Structure-Based Models. - Jeffrey K. Noel; Mariana Levi; Mohit Raghunathan; Heiko Lammert; Ryan L. Hayes; José N. Onuchic; Paul C. Whitford (PLoS Comput. Biol., 2016)