CHUCKLES: A method for representing and searching peptide and peptoid sequences on both monomer and atomic levels. - Michael A. Siani; David Weininger; Jeffrey M. Blaney (J. Chem. Inf. Comput. Sci., 1994)

CHORTLES: A Method for Representing Oligomeric and Template-Based Mixtures. - Michael A. Siani; David Weininger; Craig A. James; Jeffrey M. Blaney (J. Chem. Inf. Comput. Sci., 1995)

A very short history of structure-based design: how did we get here and where do we need to go? - Jeffrey M. Blaney (J. Comput. Aided Mol. Des., 2012)

An integrated suite of modeling tools that empower scientists in structure- and property-based drug design. - Jianwen A. Feng; Ignacio Aliagas; Philippe Bergeron 002; Jeffrey M. Blaney; Erin K. Bradley; Michael F. T. Koehler; Man-Ling Lee; Daniel F. Ortwine; Vickie Tsui; Johnny Wu; Alberto Gobbi (J. Comput. Aided Mol. Des., 2015)

Enabling drug discovery project decisions with integrated computational chemistry and informatics. - Vickie Tsui; Daniel F. Ortwine; Jeffrey M. Blaney (J. Comput. Aided Mol. Des., 2017)