Rhythmidia: A modern tool for circadian period analysis of filamentous fungi. - Alex T. Keeley; Jeffrey M. Lotthammer; Jacqueline F. Pelham (PLoS Comput. Biol., 2024)

Disentangling Folding from Energetic Traps in Simulations of Disordered Proteins. - Jeffrey M. Lotthammer; Alex S. Holehouse (J. Chem. Inf. Model., 2025)