QUDeX-MS: hydrogen/deuterium exchange calculation for mass spectra with resolved isotopic fine structure. - Joseph P. Salisbury; Qian Liu; Jeffrey N. Agar (BMC Bioinform., 2014)

Unsupervised segmentation of mass spectrometric ion images characterizes morphology of tissues. - Dan Guo; Kylie A. Bemis; Catherine Rawlins; Jeffrey N. Agar; Olga Vitek (Bioinform., 2019)

massNet: integrated processing and classification of spatially resolved mass spectrometry data using deep learning for rapid tumor delineation. - Walid M. Abdelmoula; Sylwia Stopka; Elizabeth C. Randall; Michael Regan; Jeffrey N. Agar; Jann N. Sarkaria; William M. Wells III; Tina Kapur; Nathalie Y. R. Agar (Bioinform., 2022)