Differential expression in SAGE: accounting for normal between-library variation. - Keith A. Baggerly; Li Deng; Jeffrey S. Morris; C. Marcelo Aldaz (Bioinform., 2003)

Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments. - Keith A. Baggerly; Jeffrey S. Morris; Kevin R. Coombes (Bioinform., 2004)

Overdispersed logistic regression for SAGE: Modelling multiple groups and covariates. - Keith A. Baggerly; Li Deng; Jeffrey S. Morris; C. Marcelo Aldaz (BMC Bioinform., 2004)

Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum. - Jeffrey S. Morris; Kevin R. Coombes; John M. Koomen; Keith A. Baggerly; Ryuji Kobayashi (Bioinform., 2005)

PrepMS: TOF MS data graphical preprocessing tool. - Yuliya V. Karpievitch; Elizabeth G. Hill; Adam J. Smolka; Jeffrey S. Morris; Kevin R. Coombes; Keith A. Baggerly; Jonas S. Almeida (Bioinform., 2007)

Clustering of time-course gene expression data using functional data analysis. - Joon Jin Song; Ho-Jin Lee; Jeffrey S. Morris; Sanghoon Kang (Comput. Biol. Chem., 2007)

Pinnacle: a fast, automatic and accurate method for detecting and quantifying protein spots in 2-dimensional gel electrophoresis data. - Jeffrey S. Morris; Brittan N. Clark; Howard B. Gutstein (Bioinform., 2008)

Informatics and Statistics for Analyzing 2-D Gel Electrophoresis Images. - Andrew W. Dowsey; Jeffrey S. Morris; Howard B. Gutstein; Guang-Zhong Yang (Proteome Bioinformatics, 2010)

Hierarchical Bayesian methods for integration of various types of genomics data. - Elizabeth M. Jennings; Jeffrey S. Morris; Raymond J. Carroll; Ganiraju Manyam; Veerabhadran Baladandayuthapani (GENSiPS, 2012)

Integrative analysis of multi-modal correlated imaging-genomics data in glioblastoma. - Rolando J. Olivares; Arvind U. K. Rao; Ganesh Rao; Jeffrey S. Morris; Veerabhadran Baladandayuthapani (GENSiPS, 2013)

iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data. - Wenting Wang; Veerabhadran Baladandayuthapani; Jeffrey S. Morris; Bradley M. Broom; Ganiraju Manyam; Kim-Anh Do (Bioinform., 2013)

Bayesian methods for expression-based integration of various types of genomics data. - Elizabeth M. Jennings; Jeffrey S. Morris; Raymond J. Carroll; Ganiraju Manyam; Veerabhadran Baladandayuthapani (EURASIP J. Bioinform. Syst. Biol., 2013)

A new paradigm for clinical biomarker discovery and screening with Mass Spectrometry through biomedical image analysis principles. - Hanqing Liao; Emmanouil Moschidis; Isabel Riba-Garcia; Yan Zhang; Richard D. Unwin; Jeffrey S. Morris; Jim Graham; Andrew W. Dowsey (ISBI, 2014)

Identification of differentially methylated loci using wavelet-based functional mixed models. - Wonyul Lee; Jeffrey S. Morris (Bioinform., 2016)

Multivariate functional response regression, with application to fluorescence spectroscopy in a cervical pre-cancer study. - Hongxiao Zhu; Jeffrey S. Morris; Fengrong Wei; Dennis D. Cox (Comput. Stat. Data Anal., 2017)

Robust and Gaussian spatial functional regression models for analysis of event-related potentials. - Hongxiao Zhu; Francesco Versace; Paul M. Cinciripini; Philip Rausch; Jeffrey S. Morris (NeuroImage, 2018)

A Unified Analysis of Structured Sonar-Terrain Data Using Bayesian Functional Mixed Models. - Hongxiao Zhu; Philip Caspers; Jeffrey S. Morris; Xiaowei Wu 003; Rolf Müller 001 (Technometrics, 2018)

Ideas for how informaticians can get involved with COVID-19 research. - Jason H. Moore; Ian Barnett; Mary Regina Boland; Yong Chen 016; George Demiris; Graciela Gonzalez-Hernandez; Daniel S. Herman; Blanca E. Himes; Rebecca A. Hubbard; Dokyoon Kim; Jeffrey S. Morris; Danielle L. Mowery; et al. (BioData Min., 2020)

COVID-TRACK: world and USA SARS-COV-2 testing and COVID-19 tracking. - Ye Emma Zohner; Jeffrey S. Morris (BioData Min., 2021)

Methylation-eQTL analysis in cancer research. - Yusha Liu; Keith A. Baggerly; Elias Orouji; Ganiraju Manyam; Huiqin Chen; Michael Lam; Jennifer S. Davis; Michael S. Lee; Bradley M. Broom; David G. Menter; Kunal Rai; Scott Kopetz; et al. (Bioinform., 2021)

Ultra-Fast Approximate Inference Using Variational Functional Mixed Models. - Shuning Huo; Jeffrey S. Morris; Hongxiao Zhu (J. Comput. Graph. Stat., 2023)

Covariance Assisted Multivariate Penalized Additive Regression (CoMPAdRe). - Neel Desai; Veerabhadran Baladandayuthapani; Russell T. Shinohara; Jeffrey S. Morris (J. Comput. Graph. Stat., 2025)