Spatial Transmission of 2009 Pandemic Influenza in the US. - Julia R. Gog; Sébastien Ballesteros; Cécile Viboud; Lone Simonsen; Ottar N. Bjørnstad; Jeffrey Shaman; Dennis L. Chao; Farid Khan; Bryan T. Grenfell (PLoS Comput. Biol., 2014)

Comparison of Filtering Methods for the Modeling and Retrospective Forecasting of Influenza Epidemics. - Wan Yang; Alicia Karspeck; Jeffrey Shaman (PLoS Comput. Biol., 2014)

Impact of School Cycles and Environmental Forcing on the Timing of Pandemic Influenza Activity in Mexican States, May-December 2009. - James Tamerius; Cécile Viboud; Jeffrey Shaman; Gerardo Chowell (PLoS Comput. Biol., 2015)

Forecasting Influenza Epidemics in Hong Kong. - Wan Yang; Benjamin J. Cowling; Eric H. Y. Lau; Jeffrey Shaman (PLoS Comput. Biol., 2015)

Collective influence maximization in threshold models of information cascading with first-order transitions. - Sen Pei; Xian Teng; Jeffrey Shaman; Flaviano Morone; Hernán A. Makse (CoRR, 2016)

Retrospective Parameter Estimation and Forecast of Respiratory Syncytial Virus in the United States. - Julia Reis; Jeffrey Shaman (PLoS Comput. Biol., 2016)

Forecasting Influenza Outbreaks in Boroughs and Neighborhoods of New York City. - Wan Yang; Donald R. Olson; Jeffrey Shaman (PLoS Comput. Biol., 2016)

The use of ambient humidity conditions to improve influenza forecast. - Jeffrey Shaman; Sasikiran Kandula; Wan Yang; Alicia Karspeck (PLoS Comput. Biol., 2017)

Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States. - Teresa K. Yamana; Sasikiran Kandula; Jeffrey Shaman (PLoS Comput. Biol., 2017)

Geospatial characteristics of measles transmission in China during 2005-2014. - Wan Yang; Liang Wen; Shen-Long Li; Kai Chen; Wen-Yi Zhang; Jeffrey Shaman (PLoS Comput. Biol., 2017)

Use of temperature to improve West Nile virus forecasts. - Nicholas B. DeFelice; Zachary D. Schneider; Eliza Little; Christopher Barker; Kevin A. Caillouët; Scott R. Campbell; Dan Damian; Patrick Irwin; Herff M. P. Jones; John Townsend; Jeffrey Shaman (PLoS Comput. Biol., 2018)

Reappraising the utility of Google Flu Trends. - Sasikiran Kandula; Jeffrey Shaman (PLoS Comput. Biol., 2019)

Development and validation of influenza forecasting for 64 temperate and tropical countries. - Sarah C. Kramer; Jeffrey Shaman (PLoS Comput. Biol., 2019)

Predictability in process-based ensemble forecast of influenza. - Sen Pei; Mark A. Cane; Jeffrey Shaman (PLoS Comput. Biol., 2019)

Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S. - Nicholas G. Reich; Craig J. McGowan; Teresa K. Yamana; Abhinav Tushar; Evan L. Ray; Dave Osthus; Sasikiran Kandula; Logan C. Brooks; Willow Crawford-Crudell; Graham Casey Gibson; Evan Moore; Rebecca Silva; et al. (PLoS Comput. Biol., 2019)

Characteristics of measles epidemics in China (1951-2004) and implications for elimination: A case study of three key locations. - Wan Yang; Juan Li; Jeffrey Shaman (PLoS Comput. Biol., 2019)

Correction: Geospatial characteristics of measles transmission in China during 2005-2014. - Wan Yang; Liang Wen; Shen-Long Li; Kai Chen; Wen-Yi Zhang; Jeffrey Shaman (PLoS Comput. Biol., 2019)

arcasHLA: high-resolution HLA typing from RNAseq. - Rose Orenbuch; Ioan Filip; Devon Comito; Jeffrey Shaman; Itsik Pe'er; Raul Rabadan (Bioinform., 2020)

Forecasting influenza in Europe using a metapopulation model incorporating cross-border commuting and air travel. - Sarah C. Kramer; Sen Pei; Jeffrey Shaman (PLoS Comput. Biol., 2020)

Aggregating forecasts of multiple respiratory pathogens supports more accurate forecasting of influenza-like illness. - Sen Pei; Jeffrey Shaman (PLoS Comput. Biol., 2020)

Epidemic management and control through risk-dependent individual contact interventions. - Tapio Schneider; Oliver R. A. Dunbar; Jinlong Wu; Lucas Böttcher; Dmitry Burov; Alfredo Garbuno-Inigo; Gregory LeClaire Wagner; Sen Pei; Chiara Daraio; Raffaele Ferrari; Jeffrey Shaman (PLoS Comput. Biol., 2022)

Inference and dynamic simulation of malaria using a simple climate-driven entomological model of malaria transmission. - Israel Ukawuba; Jeffrey Shaman (PLoS Comput. Biol., 2022)

Development of Accurate Long-lead COVID-19 Forecast. - Wan Yang; Jeffrey Shaman (PLoS Comput. Biol., 2023)

Hindcasts and forecasts of suicide mortality in US: A modeling study. - Sasikiran Kandula; Mark Olfson; Madelyn S. Gould; Katherine M. Keyes; Jeffrey Shaman (PLoS Comput. Biol., 2023)

Inference of transmission dynamics and retrospective forecast of invasive meningococcal disease. - Jaime Cascante-Vega; Marta Galanti; Katharina Schley; Sen Pei; Jeffrey Shaman (PLoS Comput. Biol., 2023)

Challenges of COVID-19 Case Forecasting in the US, 2020-2021. - Velma K. Lopez; Estee Y. Cramer; Robert Pagano; John M. Drake; Eamon B. O'Dea; Madeline Adee; Turgay Ayer; Jagpreet Chhatwal; Ozden O. Dalgic; Mary A. Ladd; Benjamin P. Linas; Peter P. Mueller; et al. (PLoS Comput. Biol., 2024)