Including Biological Literature Improves Homology Search. - Jeffrey T. Chang; Soumya Raychaudhuri; Russ B. Altman (Pacific Symposium on Biocomputing, 2001)

Research Paper: Creating an Online Dictionary of Abbreviations from MEDLINE. - Jeffrey T. Chang; Hinrich Schütze; Russ B. Altman (J. Am. Medical Informatics Assoc., 2002)

Edinburgh-Stanford TREC-2003 Genomics Track. - Miles Osborne; Mark Cuminskey; Gail Sinclair; Matthew Smillie; Bonnie L. Webber; Jeffrey T. Chang; Nipun Mehra; Veronica Rotemberg; Russ B. Altman (TREC, 2003)

GAPSCORE: finding gene and protein names one word at a time. - Jeffrey T. Chang; Hinrich Schütze; Russ B. Altman (Bioinform., 2004)

DIG - a system for gene annotation and functional discovery. - Mark DeLong; Guang Yao; Quanli Wang; Adrian Dobra; Esther P. Black; Jeffrey T. Chang; Andrea Bild; Mike West; Joseph Nevins; Holly Dressman (Bioinform., 2005)

Biomedical term mapping databases. - Jonathan D. Wren; Jeffrey T. Chang; James Pustejovsky; Eytan Adar; Harold R. Garner; Russ B. Altman (Nucleic Acids Res., 2005)

GATHER: a systems approach to interpreting genomic signatures. - Jeffrey T. Chang; Joseph Nevins (Bioinform., 2006)

Biopython: freely available Python tools for computational molecular biology and bioinformatics. - Peter J. A. Cock; Tiago Rodrigues Antao; Jeffrey T. Chang; Brad A. Chapman; Cymon J. Cox; Andrew Dalke; Iddo Friedberg; Thomas Hamelryck; Frank Kauff; Bartek Wilczynski; Michiel J. L. de Hoon (Bioinform., 2009)

SIGNATURE: A workbench for gene expression signature analysis. - Jeffrey T. Chang; Michael L. Gatza; Joseph E. Lucas; William T. Barry; Peyton Vaughn; Joseph Nevins (BMC Bioinform., 2011)

Deriving transcriptional programs and functional processes from gene expression databases. - Jeffrey T. Chang (Bioinform., 2012)

Planning bioinformatics workflows using an expert system. - Xiaoling Chen; Jeffrey T. Chang (Bioinform., 2017)

Bioinformatics service center projects go beyond service. - Jeffrey T. Chang; David E. Volk; David G. Gorenstein; David Steffen; Elmer V. Bernstam (J. Biomed. Informatics, 2019)

Knowledge-based classification of fine-grained immune cell types in single-cell RNA-Seq data. - Xuan Liu; Sara J. C. Gosline; Lance T. Pflieger; Pierre Wallet; Archana Iyer; Justin Guinney; Andrea H. Bild; Jeffrey T. Chang (Briefings Bioinform., 2021)