MULTICLUSTAL: a systematic method for surveying Clustal W alignment parameters. - Jeffrey Yuan; Angela Amend; Joseph A. Borkowski; Reynold DelMarco; Wendy Bailey; Yuan Liu; Guochun Xie; Richard Blevins (Bioinform., 1999)

Enhanced homology searching through genome reading frame predetermination. - Jeffrey Yuan; Bruce Bush; Alex Elbrecht; Yuan Liu; Theresa Zhang; Wenqing Zhao; Richard Blevins (Bioinform., 2004)

Online expansion of rare queries for sponsored search. - Andrei Z. Broder; Peter Ciccolo; Evgeniy Gabrilovich; Vanja Josifovski; Donald Metzler; Lance Riedel; Jeffrey Yuan (WWW, 2009)

Cluster analysis of genome-wide expression differences in disease-unaffected ileal mucosa in inflammatory bowel diseases. - Tianyi Zhang 005; Robert A. DeSimone; Hongyan Chen; Christina M. Hamm; Jeffrey Yuan; Qing Qing Gong; Steven R. Hunt; Themistocles Dassopoulos; Rodney D. Newberry; Daniel N. Frank; Charles E. Robertson; Norman R. Pace; et al. (ICCABS, 2011)

Supercharging Recommender Systems using Taxonomies for Learning User Purchase Behavior. - Bhargav Kanagal; Amr Ahmed 001; Sandeep Pandey; Vanja Josifovski; Jeffrey Yuan; Lluis Garcia Pueyo (Proc. VLDB Endow., 2012)

Focused matrix factorization for audience selection in display advertising. - Bhargav Kanagal; Amr Ahmed 001; Sandeep Pandey; Vanja Josifovski; Lluis Garcia Pueyo; Jeffrey Yuan (ICDE, 2013)

Latent factor models with additive and hierarchically-smoothed user preferences. - Amr Ahmed 001; Bhargav Kanagal; Sandeep Pandey; Vanja Josifovski; Lluis Garcia Pueyo; Jeffrey Yuan (WSDM, 2013)

19.4 A 2.7-to-3.7GHz rapid interférer detector exploiting compressed sampling with a quadrature analog-to-information converter. - Rabia Tugce Yazicigil; Tanbir Haque; Michael R. Whalen; Jeffrey Yuan; John Wright 001; Peter R. Kinget (ISSCC, 2015)

Wideband Rapid Interferer Detector Exploiting Compressed Sampling With a Quadrature Analog-to-Information Converter. - Rabia Tugce Yazicigil; Tanbir Haque; Michael R. Whalen; Jeffrey Yuan; John Wright 001; Peter R. Kinget (IEEE J. Solid State Circuits, 2015)

Assembly of Long Error-Prone Reads Using de Bruijn Graphs. - Yu Lin 001; Max W. Shen; Jeffrey Yuan; Mark Chaisson; Pavel A. Pevzner (RECOMB, 2016)

Assembly of long error-prone reads using de Bruijn graphs. - Yu Lin 001; Jeffrey Yuan; Mikhail Kolmogorov; Max W. Shen; Mark Chaisson; Pavel A. Pevzner (Proc. Natl. Acad. Sci. USA, 2016)

Assembly of Long Error-Prone Reads Using Repeat Graphs. - Mikhail Kolmogorov; Jeffrey Yuan; Yu Lin 001; Pavel A. Pevzner (RECOMB, 2018)

Genome Assembly of Long Error-Prone Reads Using De Bruijn Graphs and Repeat Graphs. - Jeffrey Yuan (2019)