Computing motif correlations in proteins. - Jorng-Tzong Horng; Hsien-Da Huang; Shih-Hsien Wang; Ming-You Chen; Shir-Ly Huang; Jenn-Kang Hwang (J. Comput. Chem., 2003)

The Amino Acid-Coupling Sequence Patterns in Thermophilic and Mesophilic Proteomes. - Han-Kuen Liang; Chia-Mao Huang; Jenn-Kang Hwang; Ming-Tat Ko (ISPAN, 2004)

Numerical Performance and Throughput Benchmark for Electronic Structure Calculations in PC-Linux Systems with New Architectures, Updated Compilers, and Libraries. - Jen-Shiang K. Yu; Jenn-Kang Hwang; Chuan Yi Tang; Chin-Hui Yu (J. Chem. Inf. Model., 2004)

GEMSCORE: A New Empirical Energy Function for Protein Folding. - Yi-Yuan Chiu; Jenn-Kang Hwang; Jinn-Moon Yang (CIBCB, 2005)

(PS)2: protein structure prediction server. - Chih-Chieh Chen; Jenn-Kang Hwang; Jinn-Moon Yang (Nucleic Acids Res., 2006)

Protein subcellular localization prediction based on compartment-specific features and structure conservation. - Emily Chia-Yu Su; Hua-Sheng Chiu; Allan Lo; Jenn-Kang Hwang; Ting-Yi Sung; Wen-Lian Hsu (BMC Bioinform., 2007)

pKNOT: the protein KNOT web server. - Yan-Long Lai; Shih-Chung Yen; Sung-Huan Yu; Jenn-Kang Hwang (Nucleic Acids Res., 2007)

KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns. - Yung-Hao Wong; Tzong-Yi Lee; Han-Kuen Liang; Chia-Mao Huang; Ting-Yuan Wang; Yi-Huan Yang; Chia-Huei Chu; Hsien-Da Huang; Ming-Tat Ko; Jenn-Kang Hwang (Nucleic Acids Res., 2007)

Prediction of Protein Subcellular Localizations. - Chin-Sheng Yu; Jenn-Kang Hwang (ISDA (1), 2008)

Predicting RNA-binding sites of proteins using support vector machines and evolutionary information. - Cheng-Wei Cheng; Emily Chia-Yu Su; Jenn-Kang Hwang; Ting-Yi Sung; Wen-Lian Hsu (BMC Bioinform., 2008)

Soft energy function and generic evolutionary method for discriminating native from nonnative protein conformations. - Yi-Yuan Chiu; Jenn-Kang Hwang; Jinn-Moon Yang (J. Comput. Chem., 2008)

(PS)2-v2: template-based protein structure prediction server. - Chih-Chieh Chen; Jenn-Kang Hwang; Jinn-Moon Yang (BMC Bioinform., 2009)

pKNOT v.2: the protein KNOT web server. - Yan-Long Lai; Chih-Chieh Chen; Jenn-Kang Hwang (Nucleic Acids Res., 2012)

CPred: a web server for predicting viable circular permutations in proteins. - Wei-Cheng Lo; Li-Fen Wang; Yen-Yi Liu; Tian Dai; Jenn-Kang Hwang; Ping-Chiang Lyu (Nucleic Acids Res., 2012)

On the packing density of the unbound protein-protein interaction interface and its implications in dynamics. - Jau-Ji Lin; Zih-Lin Lin; Jenn-Kang Hwang; Tsun-Tsao Huang (BMC Bioinform., 2015)

(PS)2: protein structure prediction server version 3.0. - Tsun-Tsao Huang; Jenn-Kang Hwang; Chu-Huang Chen; Chih-Sheng Chu; Chi-Wen Lee; Chih-Chieh Chen (Nucleic Acids Res., 2015)

MIB: Metal Ion-Binding Site Prediction and Docking Server. - Yu-Feng Lin; Chih-Wen Cheng; Chung-Shiuan Shih; Jenn-Kang Hwang; Chin-Sheng Yu; Chih-Hao Lu (J. Chem. Inf. Model., 2016)