ArrayPipe: a flexible processing pipeline for microarray data. - Karsten Hokamp; Fiona M. Roche; Michael Acab; Marc-Etienne Rousseau; Byron Kuo; David L. Goode; Dana Aeschliman; Jenny Bryan; Lorne A. Babiuk; Robert E. W. Hancock; Fiona S. L. Brinkman (Nucleic Acids Res., 2004)

Meta-Analysis of Differentiating Mouse Embryonic Stem Cell Gene Expression Kinetics Reveals Early Change of a Small Gene Set. - Clive H. Glover; Michael Marin; Connie J. Eaves; Cheryl D. Helgason; James M. Piret; Jennifer Bryan (PLoS Comput. Biol., 2006)

ddpcr: an R package and web application for analysis of droplet digital PCR data. - Dean A. Attali; Roza Bidshahri; Charles Haynes; Jennifer Bryan (F1000Research, 2016)

Excuse me, do you have a moment to talk about version control? - Jennifer Bryan (PeerJ Prepr., 2017)

Good enough practices in scientific computing. - Greg Wilson; Jennifer Bryan; Karen Cranston; Justin Kitzes; Lex Nederbragt; Tracy K. Teal (PLoS Comput. Biol., 2017)

Welcome to the Tidyverse. - Hadley Wickham; Mara Averick; Jennifer Bryan; Winston Chang; Lucy D'Agostino McGowan; Romain François; Garrett Grolemund; Alex Hayes; Lionel Henry; Jim Hester; Max Kuhn; Thomas Lin Pedersen; et al. (J. Open Source Softw., 2019)