Anaphora resolution in biomedical literature: a hybrid approach. - Jennifer D'Souza 001; Vincent Ng 001 (BCB, 2012)

Temporal Relation Identification and Classification in Clinical Notes. - Jennifer D'Souza 001; Vincent Ng 001 (BCB, 2013)

Classifying Temporal Relations with Rich Linguistic Knowledge. - Jennifer D'Souza 001; Vincent Ng 001 (HLT-NAACL, 2013)

Classifying temporal relations in clinical data: A hybrid, knowledge-rich approach. - Jennifer D'Souza 001; Vincent Ng 001 (J. Biomed. Informatics, 2013)

Ensemble-Based Medical Relation Classification. - Jennifer D'Souza 001; Vincent Ng 001 (COLING, 2014)

Annotating Inter-Sentence Temporal Relations in Clinical Notes. - Jennifer D'Souza 001; Vincent Ng 001 (LREC, 2014)

Knowledge-rich temporal relation identification and classification in clinical notes. - Jennifer D'Souza 001; Vincent Ng 001 (Database J. Biol. Databases Curation, 2014)

A Multi-Pass Sieve for Name Normalization. - Jennifer D'Souza 001 (AAAI, 2015)

A Sequence Labeling Approach to Deriving Word Variants. - Jennifer D'Souza 001 (AAAI, 2015)

Sieve-Based Entity Linking for the Biomedical Domain. - Jennifer D'Souza 001; Vincent Ng 001 (ACL (2), 2015)

Sieve-Based Spatial Relation Extraction with Expanding Parse Trees. - Jennifer D'Souza 001; Vincent Ng 001 (EMNLP, 2015)

UTD: Ensemble-Based Spatial Relation Extraction. - Jennifer D'Souza 001; Vincent Ng 001 (SemEval@NAACL-HLT, 2015)

Open Research Knowledge Graph: Next Generation Infrastructure for Semantic Scholarly Knowledge. - Mohamad Yaser Jaradeh; Allard Oelen; Kheir Eddine Farfar; Manuel Prinz; Jennifer D'Souza 001; Gábor Kismihók; Markus Stocker; Sören Auer (K-CAP, 2019)

Team SVMrank: Leveraging Feature-rich Support Vector Machines for Ranking Explanations to Elementary Science Questions. - Jennifer D'Souza 001; Isaiah Onando Mulang'; Sören Auer (TextGraphs@EMNLP, 2019)

ORKG overview resources. - Mohamad Yaser Jaradeh; Allard Oelen; Viktor Kovtun; Manuel Prinz; Gábor Kismihók; Jennifer D'Souza 001; Markus Stocker; Sören Auer (Zenodo, 2019)

TPDL 2019, ORKG overview resources. - Mohamad Yaser Jaradeh; Allard Oelen; Viktor Kovtun; Manuel Prinz; Gábor Kismihók; Jennifer D'Souza 001; Markus Stocker; Sören Auer (Zenodo, 2019)

Targeting precision: A hybrid scientific relation extraction pipeline for improved scholarly knowledge organization. - Ming Jiang 018; Jennifer D'Souza 001; Sören Auer; J. Stephen Downie (ASIST, 2020)

Domain-Independent Extraction of Scientific Concepts from Research Articles. - Arthur Brack; Jennifer D'Souza 001; Anett Hoppe; Sören Auer; Ralph Ewerth (ECIR (1), 2020)

SciBERT-based Semantification of Bioassays in the Open Research Knowledge Graph. - Marco Anteghini; Jennifer D'Souza 001; Vítor A. P. Martins dos Santos; Sören Auer (EKAW (Posters & Demos), 2020)

Representing Semantified Biological Assays in the Open Research Knowledge Graph. - Marco Anteghini; Jennifer D'Souza 001; Vítor A. P. Martins dos Santos; Sören Auer (ICADL, 2020)

Improving Scholarly Knowledge Representation: Evaluating BERT-Based Models for Scientific Relation Classification. - Ming Jiang 018; Jennifer D'Souza 001; Sören Auer; J. Stephen Downie (ICADL, 2020)

NLPContributions: An Annotation Scheme for Machine Reading of Scholarly Contributions in Natural Language Processing Literature. - Jennifer D'Souza 001; Sören Auer (EEKE@JCDL, 2020)

Toward Representing Research Contributions in Scholarly Knowledge Graphs Using Knowledge Graph Cells. - Lars Vogt; Jennifer D'Souza 001; Markus Stocker; Sören Auer (JCDL, 2020)

The STEM-ECR Dataset: Grounding Scientific Entity References in STEM Scholarly Content to Authoritative Encyclopedic and Lexicographic Sources. - Jennifer D'Souza 001; Anett Hoppe; Arthur Brack; Mohamad Yaser Jaradeh; Sören Auer; Ralph Ewerth (LREC, 2020)

Fine-tuning BERT with Focus Words for Explanation Regeneration. - Isaiah Onando Mulang'; Jennifer D'Souza 001; Sören Auer (*SEM@COLING, 2020)

Graphing Contributions in Natural Language Processing Research: Intra-Annotator Agreement on a Trial Dataset. - Jennifer D'Souza 001; Sören Auer (CoRR, 2020)

Easy Semantification of Bioassays. - Marco Anteghini; Jennifer D'Souza 001; Vítor A. P. Martins dos Santos; Sören Auer (AI*IA, 2021)

Pattern-Based Acquisition of Scientific Entities from Scholarly Article Titles. - Jennifer D'Souza 001; Sören Auer (ICADL, 2021)

Automated Mining of Leaderboards for Empirical AI Research. - Salomon Kabongo; Jennifer D'Souza 001; Sören Auer (ICADL, 2021)

SemEval-2021 Task 11: NLPContributionGraph - Structuring Scholarly NLP Contributions for a Research Knowledge Graph. - Jennifer D'Souza 001; Sören Auer; Ted Pedersen (SemEval@ACL/IJCNLP, 2021)

Eigenfactor. - Grischa Fraumann; Jennifer D'Souza 001; Kim Holmberg (CoRR, 2021)

Sentence, Phrase, and Triple Annotations to Build a Knowledge Graph of Natural Language Processing Contributions - A Trial Dataset. - Jennifer D'Souza 001; Sören Auer (J. Data Inf. Sci., 2021)

The Digitalization of Bioassays in the Open Research Knowledge Graph. - Jennifer D'Souza 001; Anita Monteverdi; Muhammad Haris 001; Marco Anteghini; Kheir Eddine Farfar; Markus Stocker; Vítor A. P. Martins dos Santos; Sören Auer (DEXA (1), 2022)

Computer Science Named Entity Recognition in the Open Research Knowledge Graph. - Jennifer D'Souza 001; Sören Auer (ICADL, 2022)

Clustering Semantic Predicates in the Open Research Knowledge Graph. - Omar Arab Oghli; Jennifer D'Souza 001; Sören Auer (ICADL, 2022)

Overview of STEM Science as Process, Method, Material, and Data Named Entities. - Jennifer D'Souza 001 (CoRR, 2022)

Evaluating BERT-based scientific relation classifiers for scholarly knowledge graph construction on digital library collections. - Ming Jiang 018; Jennifer D'Souza 001; Sören Auer; J. Stephen Downie (Int. J. Digit. Libr., 2022)

Leveraging Large Language? Models with Multiple Loss Learners for Few-Shot Author Profiling. - Hamed Babaei Giglou; Mostafa Rahgouy; Jennifer D'Souza 001; Milad Molazadeh Oskuee; Hadi Bayrami Asl Tekanlou; Cheryl D. Seals (CLEF (Working Notes), 2023)

Organizing Scholarly Knowledge in the Open Research Knowledge Graph An Open-Science Platform for FAIR Scholarly Knowledge. - Sören Auer; Markus Stocker; Oliver Karras; Allard Oelen; Jennifer D'Souza 001; Anna-Lena Lorenz (CoRDI, 2023)

Evaluating Prompt-Based Question Answering for Object Prediction in the Open Research Knowledge Graph. - Jennifer D'Souza 001; Moussab Hrou; Sören Auer (DEXA (1), 2023)

NFDI4DS Transfer and Application. - Ekaterina Borisova 002; Raia Abu Ahmad; Georg Rehm; Ricardo Usbeck; Jennifer D'Souza 001; Markus Stocker; Sören Auer; Judith Gilsbach; Anastasia Wolschewski; Johannes Keller 006; Daniel Schneider; Thomas Neumuth; et al. (GI-Jahrestagung, 2023)

NFDI4DS Shared Tasks. - Raia Abu Ahmad; Ekaterina Borisova 002; Georg Rehm; Stefan Dietze; Saurav Kamakar; Wolfgang Otto 002; Jennifer D'Souza 001; Fidan Limani; Ricardo Usbeck (GI-Jahrestagung, 2023)

Research Knowledge Graphs in NFDI4DS. - Saurav Karmakar; Matthäus Zloch; Fidan Limani; Benjamin Zapilko; Sharmila Upadhyaya; Jennifer D'Souza 001; Leyla Jael Castro; Georg Rehm; Marcel R. Ackermann; Harald Sack; Zeyd Boukhers; Sonja Schimmler; et al. (GI-Jahrestagung, 2023)

Similar Papers Recommendation for Research Comparisons. - Vladyslav Nechakhin; Jennifer D'Souza 001 (SEMANTICS Workshops, 2023)

Probing Large Language Models for Scientific Synonyms. - Freya Thießen; Jennifer D'Souza 001; Markus Stocker (SEMANTICS Workshops, 2023)

Toward Semantic Publishing in Non-invasive Brain Stimulation: A Comprehensive Analysis of rTMS Studies. - Swathi Anil; Jennifer D'Souza 001 (ICADL (2), 2023)

Zero-Shot Entailment of Leaderboards for Empirical AI Research. - Salomon Kabongo; Jennifer D'Souza 001; Sören Auer (JCDL, 2023)

Procedural Text Mining with Large Language Models. - Anisa Rula; Jennifer D'Souza 001 (K-CAP, 2023)

Towards FAIR Semantic Publishing of Research Dataset Metadata in the Open Research Knowledge Graph. - Raia Abu Ahmad; Jennifer D'Souza 001; Matthäus Zloch; Wolfgang Otto 002; Georg Rehm; Allard Oelen; Stefan Dietze; Sören Auer (Onto4FAIR, 2023)

LLMs4OL: Large Language Models for Ontology Learning. - Hamed Babaei Giglou; Jennifer D'Souza 001; Sören Auer (ISWC, 2023)

Ranking facts for explaining answers to elementary science questions. - Jennifer D'Souza 001; Isaiah Onando Mulang'; Sören Auer (Nat. Lang. Eng., 2023)

Impact of COVID-19 research: a study on predicting influential scholarly documents using machine learning and a domain-independent knowledge graph. - Gollam Rabby; Jennifer D'Souza 001; Allard Oelen; Lucie Dvorackova; Vojtech Svátek; Sören Auer (J. Biomed. Semant., 2023)

Overview of the CLEF 2024 SimpleText Task 4: SOTA? Tracking the State-of-the-Art in Scholarly Publications. - Jennifer D'Souza 001; Salomon Kabongo; Hamed Babaei Giglou; Yue Zhang 069 (CLEF (Working Notes), 2024)

Overview of the CLEF 2024 SimpleText Track - Improving Access to Scientific Texts for Everyone. - Liana Ermakova; Eric SanJuan; Stéphane Huet; Hosein Azarbonyad; Giorgio Maria Di Nunzio; Federica Vezzani; Jennifer D'Souza 001; Jaap Kamps (CLEF (2), 2024)

Exploring the Latest LLMs for Leaderboard Extraction. - Salomon Kabongo; Jennifer D'Souza 001; Sören Auer (CLEF (Working Notes), 2024)

CLEF 2024 SimpleText Track: Améliorer l'accès aux textes scientifiques pour tous. - Liana Ermakova; Eric SanJuan; Stéphane Huet; Hosein Azarbonyad; Federica Vezzani; Giorgio Maria Di Nunzio; Jennifer D'Souza 001; Salomon Kabongo; Hamed Babaei Giglou; Yue Zhang 069; Sören Auer; Jaap Kamps (CORIA, 2024)

Large Language Models for Scientific Information Extraction: An Empirical Study for Virology. - Mahsa Shamsabadi; Jennifer D'Souza 001; Sören Auer (EACL (Findings), 2024)

CLEF 2024 SimpleText Track - Improving Access to Scientific Texts for Everyone. - Liana Ermakova; Eric SanJuan; Stéphane Huet; Hosein Azarbonyad; Giorgio Maria Di Nunzio; Federica Vezzani; Jennifer D'Souza 001; Salomon Kabongo; Hamed Babaei Giglou; Yue Zhang 069; Sören Auer; Jaap Kamps (ECIR (6), 2024)

LLMs4OM: Matching Ontologies with Large Language Models. - Hamed Babaei Giglou; Jennifer D'Souza 001; Felix Engel 003; Sören Auer (ESWC Satellite Events (1), 2024)

LLMs4Synthesis: Leveraging Large Language Models for Scientific Synthesis. - Hamed Babaei Giglou; Jennifer D'Souza 001; Sören Auer (JCDL, 2024)

Large Language Models as Evaluators for Scientific Synthesis. - Julia Evans; Jennifer D'Souza 001; Sören Auer (KONVENS, 2024)

Preface for LLMs4OL 2024: The 1st Large Language Models for Ontology Learning Challenge at the 23rd ISWC. - Hamed Babaei Giglou; Jennifer D'Souza 001; Sören Auer (LLMs4OL@ISWC, 2024)

LLMs4OL 2024 Overview: The 1st Large Language Models for Ontology Learning Challenge. - Hamed Babaei Giglou; Jennifer D'Souza 001; Sören Auer (LLMs4OL@ISWC, 2024)

LLMs4OL 2024 Datasets: Toward Ontology Learning with Large Language Models. - Hamed Babaei Giglou; Jennifer D'Souza 001; Sameer Sadruddin; Sören Auer (LLMs4OL@ISWC, 2024)

Effective Context Selection in LLM-Based Leaderboard Generation: An Empirical Study. - Salomon Kabongo; Jennifer D'Souza 001; Sören Auer (NLDB (2), 2024)

A FAIR and Free Prompt-Based Research Assistant. - Mahsa Shamsabadi; Jennifer D'Souza 001 (NLDB (2), 2024)

Scholarly Question Answering Using Large Language Models in the NFDI4DataScience Gateway. - Hamed Babaei Giglou; Tilahun Abedissa Taffa; Rana Abdullah; Aida Usmanova; Ricardo Usbeck; Jennifer D'Souza 001; Sören Auer (NSLP, 2024)

Exploring Large Language Models for Procedure Extraction from Documents. - Anisa Rula; Jennifer D'Souza 001 (SEBD, 2024)

Leveraging GPT Models For Semantic Table Annotation. - Jean Petit Bikim; Carick Appolinaire Atezong Ymele; Azanzi Jiomekong; Allard Oelen; Gollam Rabby; Jennifer D'Souza 001; Sören Auer (SemTab@ISWC, 2024)

From Keywords to Structured Summaries: Streamlining Scholarly Information Access. - Mahsa Shamsabadi; Jennifer D'Souza 001 (ISWC (Posters/Demos/Industry), 2024)

From Keywords to Structured Summaries: Streamlining Scholarly Knowledge Access. - Mahsa Shamsabadi; Jennifer D'Souza 001 (CoRR, 2024)

Toward FAIR Semantic Publishing of Research Dataset Metadata in the Open Research Knowledge Graph. - Raia Abu Ahmad; Jennifer D'Souza 001; Matthäus Zloch; Wolfgang Otto 002; Georg Rehm; Allard Oelen; Stefan Dietze; Sören Auer (CoRR, 2024)

Astro-NER - Astronomy Named Entity Recognition: Is GPT a Good Domain Expert Annotator? - Julia Evans; Sameer Sadruddin; Jennifer D'Souza 001 (CoRR, 2024)

Instruction Finetuning for Leaderboard Generation from Empirical AI Research. - Salomon Kabongo; Jennifer D'Souza 001 (CoRR, 2024)

Fine-tuning and Prompt Engineering with Cognitive Knowledge Graphs for Scholarly Knowledge Organization. - Gollam Rabby; Sören Auer; Jennifer D'Souza 001; Allard Oelen (CoRR, 2024)

ORKG-Leaderboards: a systematic workflow for mining leaderboards as a knowledge graph. - Salomon Kabongo; Jennifer D'Souza 001; Sören Auer (Int. J. Digit. Libr., 2024)

Evaluating Large Language Models for Structured Science Summarization in the Open Research Knowledge Graph. - Vladyslav Nechakhin; Jennifer D'Souza 001; Steffen Eger (Inf., 2024)

LLMs4OL 2024 Datasets: Toward Ontology Learning with Large Language Models. - Hamed Babaei Giglou; Jennifer D'Souza 001; Sameer Sadruddin; Sören Auer (Zenodo, 2024)

Correction: ORKG-Leaderboards: a systematic workflow for mining leaderboards as a knowledge graph. - Salomon Kabongo; Jennifer D'Souza 001; Sören Auer (Int. J. Digit. Libr., 2024)

YESciEval: Robust LLM-as-a-Judge for Scientific Question Answering. - Jennifer D'Souza 001; Hamed Babaei Giglou; Quentin Münch (ACL (1), 2025)

OntoAligner: A Comprehensive Modular and Robust Python Toolkit for Ontology Alignment. - Hamed Babaei Giglou; Jennifer D'Souza 001; Oliver Karras; Sören Auer (ESWC (2), 2025)

LLMs4SchemaDiscovery: A Human-in-the-Loop Workflow for Scientific Schema Mining with Large Language Models. - Sameer Sadruddin; Jennifer D'Souza 001; Eleni Poupaki; Alex Watkins; Hamed Babaei Giglou; Anisa Rula; Bora Karasulu; Sören Auer; Adrie Mackus; Erwin Kessels (ESWC (2), 2025)

Research Knowledge Graphs: The Shifting Paradigm of Scholarly Information Representation. - Matthäus Zloch; Danilo Dessì; Jennifer D'Souza 001; Leyla Jael Castro; Benjamin Zapilko; Saurav Karmakar; Brigitte Mathiak; Markus Stocker; Wolfgang Otto 002; Sören Auer; Stefan Dietze (ESWC (2), 2025)

NFDI4DS: Shared Tasks for Scholarly Document Processing. - Raia Abu Ahmad; Rana Abdulla; Tilahun Abedissa Taffa; Sören Auer; Hamed Babaei Giglou; Ekaterina Borisova 002; Zongxiong Chen; Stefan Dietze; Jennifer D'Souza 001; Mayra Elwes; Genet Asefa Gesese; Shufan Jiang 001; et al. (INFORMATIK, 2025)

DeepResearchEco: A Recursive Agentic Workflow for Complex Scientific Question Answering in Ecology. - Jennifer D'Souza 001; Endres Keno Sander; Andrei C. Aioanei (SEMANTiCS (Posters, Demos, Workshops & Tutorials), 2025)

Preface for the Symbolic and Generative AI for Science. - Sanju Tiwari; Jennifer D'Souza 001; Daniil Dobriy; Sören Auer (SEMANTiCS (Posters, Demos, Workshops & Tutorials), 2025)

Bridging the Evaluation Gap: Leveraging Large Language Models for Topic Model Evaluation. - Zhiyin Tan; Jennifer D'Souza 001 (IRCDL, 2025)

Preface for LLMs4OL 2025: The 2nd Large Language Models for Ontology Learning Challenge at the 24th ISWC. - Hamed Babaei Giglou; Jennifer D'Souza 001; Andrei C. Aioanei; Nandana Mihindukulasooriya; Sören Auer (LLMs4OL@ISWC, 2025)

LLMs4OL 2025 Overview: The 2nd Large Language Models for Ontology Learning Challenge. - Hamed Babaei Giglou; Jennifer D'Souza 001; Nandana Mihindukulasooriya; Sören Auer (LLMs4OL@ISWC, 2025)

MammoTab 25: A Large-Scale Dataset for Semantic Table Interpretation - Training, Testing, and Detecting Weaknesses. - Marco Cremaschi; Federico Belotti; Jennifer D'Souza 001; Matteo Palmonari (ISWC (2), 2025)

Mining for Species, Locations, Habitats, and Ecosystems from Scientific Papers in Invasion Biology: A Large-Scale Exploratory Study with Large Language Models. - Jennifer D'Souza 001; Zachary M. Laubach; Tarek Al Mustafa; Sina Zarrieß; Robert Frühstückl; Phyllis Illari (CoRR, 2025)

Transforming Science with Large Language Models: A Survey on AI-assisted Scientific Discovery, Experimentation, Content Generation, and Evaluation. - Steffen Eger; Yong Cao 001; Jennifer D'Souza 001; Andreas Geiger 001; Christian Greisinger; Stephanie Gross; Yufang Hou 001; Brigitte Krenn; Anne Lauscher; Yizhi Li; Chenghua Lin; Nafise Sadat Moosavi; et al. (CoRR, 2025)

SemEval-2025 Task 5: LLMs4Subjects - LLM-based Automated Subject Tagging for a National Technical Library's Open-Access Catalog. - Jennifer D'Souza 001; Sameer Sadruddin; Holger Israel; Mathias Begoin; Diana Slawig (CoRR, 2025)

Atomic Layer Deposition and Etching Process Schemas Extracted with Schema-Miner. - Sameer Sadruddin; Jennifer D'Souza 001; Eleni Poupaki; Alex Watkins; Hamed Babaei Giglou; Anisa Rula; Bora Karasulu; Sören Auer; Adriaan Mackus; Wilhelmus Kessels (Zenodo, 2025)

Atomic Layer Deposition and Etching Process Schemas Extracted with Schema-Miner. - Sameer Sadruddin; Jennifer D'Souza 001; Eleni Poupaki; Alex Watkins; Hamed Babaei Giglou; Anisa Rula; Bora Karasulu; Sören Auer; Adriaan Mackus; Wilhelmus Kessels (Zenodo, 2025)

Atomic Layer Deposition and Etching Process Schemas Extracted with Schema-Miner. - Sameer Sadruddin; Jennifer D'Souza 001; Eleni Poupaki; Alex Watkins; Hamed Babaei Giglou; Anisa Rula; Bora Karasulu; Sören Auer; Adriaan Mackus; Wilhelmus Kessels (Zenodo, 2025)

OntoAligner Meets Knowledge Graph Embedding Aligners. - Hamed Babaei Giglou; Jennifer D'Souza 001; Sören Auer; Mahsa Sanaei (CoRR, 2025)

Toward purpose-oriented topic model evaluation enabled by large language models. - Zhiyin Tan; Jennifer D'Souza 001 (Int. J. Digit. Libr., 2025)