Peptide length-based prediction of peptide-MHC class II binding. - Stewart T. Chang; Debashis Ghosh; Denise E. Kirschner; Jennifer J. Linderman (Bioinform., 2006)

Both Ligand- and Cell-Specific Parameters Control Ligand Agonism in a Kinetic Model of G Protein-Coupled Receptor Signaling. - Tamara Kinzer-Ursem; Jennifer J. Linderman (PLoS Comput. Biol., 2007)

Identification of Key Processes that Control Tumor Necrosis Factor Availability in a Tuberculosis Granuloma. - Mohammad Fallahi-Sichani; Matthew A. Schaller; Denise E. Kirschner; Steven L. Kunkel; Jennifer J. Linderman (PLoS Comput. Biol., 2010)

Phase-Locked Signals Elucidate Circuit Architecture of an Oscillatory Pathway. - Andreja Jovic; Bryan Howell; Michelle Cote; Susan M. Wade; Khamir Mehta; Atsushi Miyawaki; Richard R. Neubig; Jennifer J. Linderman; Shuichi Takayama (PLoS Comput. Biol., 2010)

In silico evaluation and exploration of antibiotic tuberculosis treatment regimens. - Elsje Pienaar; Véronique Dartois; Jennifer J. Linderman; Denise E. Kirschner (BMC Syst. Biol., 2015)

Computational and Empirical Studies Predict Mycobacterium tuberculosis-Specific T Cells as a Biomarker for Infection Outcome. - Simeone Marino; Hannah P. Gideon; Chang Gong; Shawn Mankad; John T. McCrone; Philana Ling Lin; Jennifer J. Linderman; JoAnne L. Flynn; Denise E. Kirschner (PLoS Comput. Biol., 2016)

Comparing efficacies of moxifloxacin, levofloxacin and gatifloxacin in tuberculosis granulomas using a multi-scale systems pharmacology approach. - Elsje Pienaar; Jansy Sarathy; Brendan Prideaux; Jillian Dietzold; Véronique Dartois; Denise E. Kirschner; Jennifer J. Linderman (PLoS Comput. Biol., 2017)

The Role of Dimensionality in Understanding Granuloma Formation. - Simeone Marino; Caitlin Hult; Paul Wolberg; Jennifer J. Linderman; Denise E. Kirschner (Comput., 2018)

A computational model tracks whole-lung Mycobacterium tuberculosis infection and predicts factors that inhibit dissemination. - Timothy Wessler; Louis R. Joslyn; H. Jacob Borish; Hannah P. Gideon; JoAnne L. Flynn; Denise E. Kirschner; Jennifer J. Linderman (PLoS Comput. Biol., 2020)

Optimizing tuberculosis treatment efficacy: Comparing the standard regimen with Moxifloxacin-containing regimens. - Maral Budak; Joseph M. Cicchese; Pauline Maiello; H. Jacob Borish; Alexander G. White; Harris B. Chishti; Jaime Tomko; L. James Frye; Daniel Fillmore; Kara Kracinovsky; Jennifer Sakal; Charles A. Scanga; et al. (PLoS Comput. Biol., 2023)