Automated profiling of individual cell-cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING). - Amine Merouane; Nicolas Rey-Villamizar; Yanbin Lu; Ivan Liadi; Gabrielle Romain; Jennifer Lu; Harjeet Singh; Laurence J. N. Cooper; Navin Varadarajan; Badrinath Roysam (Bioinform., 2015)

Bracken: estimating species abundance in metagenomics data. - Jennifer Lu; Florian P. Breitwieser; Peter Thielen; Steven L. Salzberg (PeerJ Comput. Sci., 2017)

Removing contaminants from databases of draft genomes. - Jennifer Lu; Steven L. Salzberg (PLoS Comput. Biol., 2018)

A review of methods and databases for metagenomic classification and assembly. - Florian P. Breitwieser; Jennifer Lu; Steven L. Salzberg (Briefings Bioinform., 2019)

SkewIT: The Skew Index Test for large-scale GC Skew analysis of bacterial genomes. - Jennifer Lu; Steven L. Salzberg (PLoS Comput. Biol., 2020)