Circadian Rhythms in Neurospora Exhibit Biologically Relevant Driven and Damped Harmonic Oscillations. - Hannah De Los Santos; Emily J. Collins; Jennifer M. Hurley; Kristin P. Bennett (BCB, 2017)

ENCORE: A Visualization Tool for Insight into Circadian Omics. - Hannah De Los Santos; Kristin P. Bennett; Jennifer M. Hurley (BCB, 2019)

ECHO: an application for detection and analysis of oscillators identifies metabolic regulation on genome-wide circadian output. - Hannah De Los Santos; Emily J. Collins; Catherine Mann; April W. Sagan; Meaghan S. Jankowski; Kristin P. Bennett; Jennifer M. Hurley (Bioinform., 2020)

MOSAIC: a joint modeling methodology for combined circadian and non-circadian analysis of multi-omics data. - Hannah De Los Santos; Kristin P. Bennett; Jennifer M. Hurley (Bioinform., 2021)

Dual-approach co-expression analysis framework (D-CAF) enables identification of novel circadian co-regulation from multi-omic timeseries data. - Joshua Chuah; Carmalena V. Cordi; Juergen Hahn; Jennifer M. Hurley (BMC Bioinform., 2025)