Spanish NER with Word Representations and Conditional Random Fields. - Jenny Copara; José Ochoa; Camilo Thorne; Goran Glavas (NEWS@ACM, 2016)

Exploring Unsupervised Features in Conditional Random Fields for Spanish Named Entity Recognition. - Jenny Copara; José Ochoa; Camilo Thorne; Goran Glavas (BRACIS, 2016)

Conditional Random Fields for Spanish Named Entity Recognition Using Unsupervised Features. - Jenny Copara; José Ochoa; Camilo Thorne; Goran Glavas (IBERAMIA, 2016)

BioBERTpt - A Portuguese Neural Language Model for Clinical Named Entity Recognition. - Elisa Terumi Rubel Schneider; João Vitor Andrioli de Souza; Julien Knafou; Lucas Emanuel Silva e Oliveira; Jenny Copara; Yohan Bonescki Gumiel; Lucas Ferro Antunes de Oliveira; Emerson Cabrera Paraiso; Douglas Teodoro; Claudia Maria Cabral Moro Barra (ClinicalNLP@EMNLP, 2020)

BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models. - Julien Knafou; Nona Naderi; Jenny Copara; Douglas Teodoro; Patrick Ruch (W-NUT@EMNLP, 2020)

Named Entity Recognition in Chemical Patents using Ensemble of Contextual Language Models. - Jenny Copara; Nona Naderi; Julien Knafou; Patrick Ruch; Douglas Teodoro (CLEF (Working Notes), 2020)

An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. - Jiayuan He 002; Dat Quoc Nguyen; Saber A. Akhondi; Christian Druckenbrodt; Camilo Thorne; Ralph Hoessel; Zubair Afzal; Zenan Zhai; Biaoyan Fang; Hiyori Yoshikawa; Ameer Albahem; Jingqi Wang; et al. (CLEF (Working Notes), 2020)

Contextualized French Language Models for Biomedical Named Entity Recognition. - Jenny Copara; Julien Knafou; Nona Naderi; Claudia Moro 001; Patrick Ruch; Douglas Teodoro (JEP-TALN-RECITAL (DEFT), 2020)

Ensemble of Deep Masked Language Models for Effective Named Entity Recognition in Health and Life Science Corpora. - Nona Naderi; Julien Knafou; Jenny Copara; Patrick Ruch; Douglas Teodoro (Frontiers Res. Metrics Anal., 2021)

On Graph Construction for Classification of Clinical Trials Protocols Using Graph Neural Networks. - Sohrab Ferdowsi; Jenny Copara; Racha Gouareb; Nikolay Borissov; Fernando Jaume-Santero; Poorya Amini; Douglas Teodoro (AIME, 2022)

A data-driven assessment of biomedical terminology evolution using information theoretical and network analysis approaches. - Jenny Copara; Nona Naderi; Gilles Falquet; Douglas Teodoro (CoRR, 2024)