Integrated Assessment and Prediction of Transcription Factor Binding. - Andreas Beyer; Christopher T. Workman; Jens Hollunder; Dörte Radke; Ulrich Möller; Thomas Wilhelm 003; Trey Ideker (PLoS Comput. Biol., 2006)

DASS: efficient discovery and p-value calculation of substructures in unordered data. - Jens Hollunder; Maik Friedel; Andreas Beyer; Christopher T. Workman; Thomas Wilhelm 003 (Bioinform., 2007)

DASS-GUI: a user interface for identification and analysis of significant patterns in non-sequential data. - Jens Hollunder; Maik Friedel; Martin Kuiper; Thomas Wilhelm 003 (Bioinform., 2010)

Flexible network reconstruction from relational databases with Cytoscape and CytoSQL. - Kris Laukens; Jens Hollunder; Thanh Hai Dang; Geert De Jaeger; Martin Kuiper; Erwin Witters; Alain Verschoren; Koenraad Van Leemput (BMC Bioinform., 2010)

Profiling of Semantically Annotated Proteins. - Jens Hollunder; Vladimir Mironov; Erick Antezana; Robert Hoehndorf; Martin Kuiper (SWAT4LS, 2012)

A Blueprint for Semantically Lifting Field Trial Data: Enabling Exploration using Knowledge Graphs. - Daniel Burkow; Jens Hollunder; Julian Heinrich; Fuad Abdallah; Miguel A. Rojas-Macias; Cord Wiljes; Philipp Cimiano; Philipp Senger (SWAT4HCLS, 2019)