Supervised Posteriors for DNA-motif Classification. - Jan Grau; Jens Keilwagen; Alexander E. Kel; Ivo Grosse; Stefan Posch (German Conference on Bioinformatics, 2007)

On the relevance of model orders to discriminative learning of Markov models. - Jan Grau; Jens Keilwagen; Ivo Grosse; Stefan Posch (LWA, 2007)

Recognition of splice sites using maximum conditional likelihood. - Jens Keilwagen; Jan Grau; Stefan Posch; Ivo Grosse (LWA, 2007)

Discriminatory Data Mapping by Matrix-Based Supervised Learning Metrics. - Marc Strickert; Petra Schneider; Jens Keilwagen; Thomas Villmann; Michael Biehl; Barbara Hammer (ANNPR, 2008)

Utilizing Promoter Pair Orientations for HMM-based Analysis of ChIP-chip Data. - Michael Seifert; Jens Keilwagen; Marc Strickert; Ivo Grosse (German Conference on Bioinformatics, 2008)

Array-based Genome Comparison of Arabidopsis Ecotypes using Hidden Markov Models. - Michael Seifert; Ali Banaei; Jens Keilwagen; Michael Florian Mette; Andreas Houben; François Roudier; Vincent Colot; Ivo Grosse; Marc Strickert (BIOSIGNALS, 2009)

Matrix Metric Adaptation Linear Discriminant Analysis of Biomedical Data. - Marc Strickert; Jens Keilwagen; Frank-Michael Schleif; Thomas Villmann; Michael Biehl (IWANN (1), 2009)

Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data. - Michael Seifert; Jens Keilwagen; Marc Strickert; Ivo Grosse (Bioinform., 2009)

Predicting DNA binding sites using generative, discriminative, and hybrid learning principles. - Jens Keilwagen (2010)

Predicting miRNA targets utilizing an Extended Profile HMM. - Jan Grau; Daniel Arend; Ivo Grosse; Artemis G. Hatzigeorgiou; Jens Keilwagen; Manolis Maragkakis; Claus Weinholdt; Stefan Posch (GCB, 2010)

Vorhersage von DNA-Bindungsstellen mit generativen, diskriminativen und hybriden Lernverfahren. - Jens Keilwagen (Ausgezeichnete Informatikdissertationen, 2010)

Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis. - Jens Keilwagen; Jan Grau; Stefan Posch; Ivo Grosse (BMC Bioinform., 2010)

Unifying generative and discriminative learning principles. - Jens Keilwagen; Jan Grau; Stefan Posch; Marc Strickert; Ivo Grosse (BMC Bioinform., 2010)

De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference. - Jens Keilwagen; Jan Grau; Ivan A. Paponov; Stefan Posch; Marc Strickert; Ivo Grosse (PLoS Comput. Biol., 2011)

Jstacs: A Java Framework for Statistical Analysis and Classification of Biological Sequences. - Jan Grau; Jens Keilwagen; André Gohr; Berit Haldemann; Stefan Posch; Ivo Grosse (J. Mach. Learn. Res., 2012)

Dispom: a Discriminative de-novo Motif Discovery Tool Based on the Jstacs Library. - Jan Grau; Jens Keilwagen; André Gohr; Ivan A. Paponov; Stefan Posch; Michael Seifert; Marc Strickert; Ivo Grosse (J. Bioinform. Comput. Biol., 2013)

A general approach for discriminative de novo motif discovery from high-throughput data. - Jan Grau; Stefan Posch; Ivo Grosse; Jens Keilwagen (GCB, 2014)

Exact algorithms and heuristics for the Quadratic Traveling Salesman Problem with an application in bioinformatics. - Anja Fischer; Frank Fischer 002; Gerold Jäger; Jens Keilwagen; Paul Molitor; Ivo Grosse (Discret. Appl. Math., 2014)

PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R. - Jan Grau; Ivo Grosse; Jens Keilwagen (Bioinform., 2015)

DiffLogo: a comparative visualization of sequence motifs. - Martin Nettling; Hendrik Treutler; Jan Grau; Jens Keilwagen; Stefan Posch; Ivo Grosse (BMC Bioinform., 2015)

Computational Recognition of RNA Splice Sites by Exact Algorithms for the Quadratic Traveling Salesman Problem. - Anja Fischer; Frank Fischer 002; Gerold Jäger; Jens Keilwagen; Paul Molitor; Ivo Grosse (Comput., 2015)

Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi. - Jens Keilwagen; Frank Hartung; Michael Paulini; Sven Twardziok; Jan Grau (BMC Bioinform., 2018)

DepLogo: visualizing sequence dependencies in R. - Jan Grau; Martin Nettling; Jens Keilwagen (Bioinform., 2019)