FaNDOM: Fast nested distance-based seeding of optical maps. - Siavash Raeisi Dehkordi; Jens Luebeck; Vineet Bafna (Patterns, 2021)

CoRAL Accurately Resolves Extrachromosomal DNA Genome Structures with Long-Read Sequencing. - Kaiyuan Zhu; Matthew G. Jones; Jens Luebeck; Xinxin Bu; Hyerim Yi; King L. Hung; Ivy Tsz-Lo Wong; Shu Zhang 014; Paul S. Mischel; Howard Y. Chang; Vineet Bafna (RECOMB, 2024)